Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq1056 138 4e-28 >seq1056 Length=3914 Score = 138 bits (152), Expect = 4e-28 Identities = 235/338 (70%), Gaps = 2/338 (1%) Strand=Plus/Minus Query 40067 GCGCGCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTC 40126 ||||||||||| | ||| ||||| |||||| || || | |||||| || || || | Sbjct 2357 GCGCGCCTTGAGCTTACCAAAGGTGATGATCTGCGCCACATGGTCCGCGCCATATTTG-C 2299 Query 40127 GGTG-ACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGG 40185 | || || || | |||||| ||||| || ||| || ||||||||||| | ||||| Sbjct 2298 GCTGGACATAGCGGATCACCTCGCCGCGCCGCGTTTCGCAAAAGTCGATGTCGAAGTCGG 2239 Query 40186 GCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGT 40245 |||| ||||| || |||||||| ||||| || || || | || || || | | || | Sbjct 2238 GCATCGACACACGTTCGGGGTTGAGGAAACGTTCAAACAGCAGACCCAGCCGCAGCGGAT 2179 Query 40246 CCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGG 40305 | ||||| |||||| || | || || || || ||| ||||||| || || | Sbjct 2178 CAAGGTCGGTGATGGTCAGCGCCCATGCCACAAGGCTGCCCGCACCCGAGCCGCGCCCCG 2119 Query 40306 GTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGT 40365 | || || | | | |||| ||||||||| ||| |||||||| |||| |||||||| Sbjct 2118 GCCCCACGGGAATGTCATTCTGCTTGGCCCATTGGATAAAGTCGGCCACGATCAGGAAGT 2059 Query 40366 AGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 || | || |||| || |||| ||| | ||||| Sbjct 2058 AGCCGGCAAAACCCATGCGGTTGATGATGCCCGTCTCG 2021 Score = 84.2 bits (92), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 39224 CTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGAT 39283 ||| |||||||| || ||||| ||||||||||| | ||||| ||| || || ||||| Sbjct 3155 CTTTTTGCCCATCGCGCGGCGCAGAAGGTCGGCATCGCCCAGCGAGTAGCCGGCAAGGAT 3096 Query 39284 CTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGG--TCGGCC 39336 ||| || |||| | |||||| ||||| || | || | |||||||| |||||| Sbjct 3095 CTGCGCGGCCTGCATCACCTGTTCCTGATAAACGAAAATCCCGTAGGTTTCGGCC 3041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160136338677488