Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq711 105 3e-18 >seq711 Length=17244 Score = 105 bits (116), Expect = 3e-18 Identities = 353/545 (65%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 51795 TATGACCTGAGTAAGGGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTG 51854 ||||| || |||||| || || | | || ||||| || |||||||| || | Sbjct 9655 TATGATTTGTCTAAGGGTTTTCCTTTGGTAACGACCAAAAAAGTGCATTTAAAGTCTATT 9714 Query 51855 GTCGGGGAGTTGCTGTGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTAC 51914 | || ||||| ||||| || ||| ||| ||| |||| |||| | | Sbjct 9715 ATTTATGAATTGCTTTGGTTTCTAAAAGGCGATACAAACATCAAATATCTTACAGATAAT 9774 Query 51915 GGCGTCAGCATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGT 51974 || || ||||||| | |||||||| || |||||||| || || ||||| || || || Sbjct 9775 GGTGTTTCCATTTGGAATGAATGGGCAGACGAAAATGGAAATCTTGGTCCAGTTTACGGA 9834 Query 51975 AAGCAGTGGCGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTC 52034 || ||| | | |||||| | | || || || | || || ||| || || Sbjct 9835 GCACAATGGAGAACTTGGGAAGGCAAAGATGGAAAAGTGGTAGACCAAATCGTAGAGGTA 9894 Query 52035 GTCAAATCAATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTG 52094 || | ||| ||||| |||||||| | || | | || || ||||||||||||| Sbjct 9895 GTAGAGCAAATCAAGAAAAATCCTGATTCTAGAAGACTTATCGTTTCTGCTTGGAATGCA 9954 Query 52095 GGTGATTTGGATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCT 52154 | || | ||||||| || || || || ||| || | || || || |||||||| Sbjct 9955 GCCGAAATTCCAAATATGGCTTTAGCGCCTTGTCATGCATTGTTTCAGTTTTATGTAGCA 10014 Query 52155 GAAGGTAAGCTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCG 52214 || || || | || || |||||||| | ||| || | || |||||||| || Sbjct 10015 GATGGAAAATTGTCACTACAATTGTATCAAAGAAGTGCTGATGTATTTTTGGGCGTCCCT 10074 Query 52215 TTTAACATTGCCAGCTATTCCTTGCTGACGCAT-CTGATTGCTCGAGCAGTTGGCCTTGA 52273 ||||||||||| || ||| | ||| || | || || | || | || || | || Sbjct 10075 TTTAACATTGCGAGTTATGCATTGTTG-TGTATGATGGTGGCGCAAGTTTGTGAATTAGA 10133 Query 52274 TGTTGGTGAATTCATTTG--GACTGGTGGCGACGTCCATATCTACAACAACCATGTAGAT 52331 || || || | || || ||| ||| || || ||||| |||||||||||| | || Sbjct 10134 AGTAGGAGA--TTATGTGCATACTTTTGGAGATGTTCATATTTACAACAACCATTTTGAG 10191 Query 52332 CAGGT 52336 ||||| Sbjct 10192 CAGGT 10196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190090704163060