Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq454 120 7e-22 seq337 93.3 1e-13 seq507 89.7 1e-12 seq287 89.7 1e-12 seq114 84.2 5e-11 >seq454 Length=44262 Score = 120 bits (132), Expect = 7e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || || |||| |||||| ||||| | | ||||| |||||||||| | Sbjct 41290 TGAAGTGTTGATTCCTTTTAGATGTTATAATCTGAAAGTGTTCTACCATCTTCTAATTAT 41349 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||||||||| || | | || | | |||||||||||| |||| ||||| Sbjct 41350 TTTCCAGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTA 41409 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||||| || | |||| || || || ||||||||||||||||| || ||| Sbjct 41410 GCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTG 41469 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || |||| | |||| Sbjct 41470 AGTGTCTTGACAAAGATTTACATT 41493 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || || |||| ||||| || || | | ||||| || ||||||| | Sbjct 41518 TGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTAT 41577 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || |||||||| || || | || | | |||||||||||| |||| ||||| Sbjct 41578 TTTCCTGCAAAGATAAGTCTTTGTTAATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTA 41637 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||||| || | |||| || || || ||||||||||| || || || ||| Sbjct 41638 GCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATTGTCTTTCCTGTG 41697 Query 152082 AGAGTCTTCACGAA 152095 || ||||| ||||| Sbjct 41698 AGTGTCTTTACGAA 41711 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 ||||| || || || |||| ||||| || || | | ||||| || ||||||| | Sbjct 41062 TGAAGTGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCGTCTTCTAATTAT 41121 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || |||||||| || | | || | | |||||||||||| |||| ||||| Sbjct 41122 TTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCCTTGTCTTAGATTTTG 41181 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 |||||||| || | |||| || || || ||||||||||| || || || ||| Sbjct 41182 GCTTTGACAGCATCAATTGTGTCAGATGGTTCAACATCAAGAGTAATTGTCTTTCCTGTG 41241 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || |||| | |||| Sbjct 41242 AGTGTCTTGACAAAGATTTACATT 41265 >seq337 Length=64228 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 62516 TGAAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 62457 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 62456 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 62397 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 62396 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 62337 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || | | |||||| Sbjct 62336 AGTGTTTTAACAAATATTTACATTTT 62311 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 63515 TGAAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 63456 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 63455 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 63396 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || |||||||| || ||||| || || Sbjct 63395 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTC 63336 Query 152082 AGAGTCTTCACGAA 152095 | |||||| ||||| Sbjct 63335 AAAGTCTTAACGAA 63322 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 61515 TGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 61456 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 61455 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 61396 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 61395 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 61336 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || | | |||||| Sbjct 61335 AGTGTTTTAACAAATATTTACATTTT 61310 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 63287 TGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 63228 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 63227 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 63168 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 63167 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 63108 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || | | |||||| Sbjct 63107 AGTGTTTTAACAAATATTTACATTTT 63082 >seq507 Length=36014 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || ||||| || || |||| ||||| ||||| | | ||||| || Sbjct 35703 TCTCAAGACTAAGTGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCC 35644 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||||| || || || || || || || | | || | | |||||||||||| Sbjct 35643 ATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTT 35584 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| ||||||| || | ||||||| || || |||||||| || Sbjct 35583 GTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGAT 35524 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT-TACCCTTACTCT 152118 ||||| || || | ||||| ||||| | | ||||| || |||| ||| Sbjct 35523 GGTTTTTCCAGTCAAGGTCTTAACGAAAATTTACATTTCTATTCTTAATCT 35473 >seq287 Length=75303 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 959 TGAAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 900 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 899 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 840 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || |||||||| || ||||| || || Sbjct 839 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTC 780 Query 152082 AGAGTCTTCACGAA 152095 | |||||| ||||| Sbjct 779 AAAGTCTTAACGAA 766 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 1964 TGAAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 1905 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 1904 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 1845 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || |||||||| || ||||| || || Sbjct 1844 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTC 1785 Query 152082 AGAGTCTTCACGAA 152095 | |||||| ||||| Sbjct 1784 AAAGTCTTAACGAA 1771 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 731 TGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 672 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 671 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 612 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 611 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 552 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || | | |||||| Sbjct 551 AGTGTTTTAACAAATATTTACATTTT 526 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 2742 TGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 2683 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 2682 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 2623 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 2622 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 2563 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 || || || || || | | |||||| Sbjct 2562 AGTGTTTTAACAAATATTTACATTTT 2537 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/194 (70%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 |||||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 2969 TGAAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 2910 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 2909 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 2850 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || |||||||| || ||||| || || Sbjct 2849 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTT-CCAGTC 2791 Query 152082 AGAGTCTTCACGAA 152095 | |||||| ||||| Sbjct 2790 AAAGTCTTAACGAA 2777 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || ||||| || || |||| ||||| || || | | ||||| |||||||||| Sbjct 1737 TGGAGAGTTGATTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTAC 1678 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 1677 TTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTA 1618 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| || | ||||||| || || ||||||||||||||||| || || Sbjct 1617 GCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTTCCTGTT 1558 Query 152082 AGAGTCTTCACGAA 152095 || || || || || Sbjct 1557 AGTGTTTTAACAAA 1544 >seq114 Length=165420 Score = 84.2 bits (92), Expect = 5e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || || |||| ||||| ||||| | | ||||| |||||||||| Sbjct 164306 ATGGAGAGTTGATTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTA 164365 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || || || || || || | | || | | |||||||||||| |||| |||||| Sbjct 164366 TTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTT 164425 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| || | ||||||| || || |||||||| ||||| || || || Sbjct 164426 AGCCTTGACAGCGTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATAGTCTTTCCAGT 164485 Query 152081 GAGAGTCTTCACGAAGACCTGCATTT 152106 | || || || || | | ||||| Sbjct 164486 TAATGTTTTTACAAATATTTACATTT 164511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786118310166