Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq112 113 9e-20 seq337 109 1e-18 seq287 109 1e-18 seq507 102 2e-16 seq114 87.8 4e-12 seq2141 84.2 5e-11 >seq112 Length=167324 Score = 113 bits (124), Expect = 9e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 |||||||| ||| || || || | ||| || | |||||||| | ||| || || ||||| Sbjct 45463 TTCTTTTTAGATATTATAATCTGAAAGAGTTCTTCCATCCTCCAATTGCTTTCCAGCAAA 45404 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || || | || || || || || || |||||||| | ||||||||| || || | Sbjct 45403 AATTAATCTTTATTAATCGGGAGGGATTCCTTCCTTGTCCTAGATCTTTGCCTTAACAGC 45344 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||| || || | || || || || ||||| ||||||||||| | |||||||| Sbjct 45343 ATCGATAGTATCAGATGGCTCAACATCAAGTGTGATGGTCTTACCCGTAAGGGTCTTAAC 45284 Query 283088 GAATATCTGCATTTT 283102 || || | ||| || Sbjct 45283 AAAAATTTACATATT 45269 >seq337 Length=64228 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 63504 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 63445 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 63444 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 63385 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | ||| || || |||||||| || || || |||||||||||||| Sbjct 63384 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 63325 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 63324 GAAAATTTACATT 63312 Score = 104 bits (114), Expect = 5e-17 Identities = 140/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 61733 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 61674 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 61673 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 61614 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG-TCAAAGTCTTAA 283086 || |||||||| || | ||| || || |||||||| || || || | |||||||||||| Sbjct 61613 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGGTCAAAGTCTTAA 61554 Query 283087 CGAATATCTGCATT 283100 |||| || | |||| Sbjct 61553 CGAAAATTTACATT 61540 >seq287 Length=75303 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 948 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 889 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 888 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 829 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | ||| || || |||||||| || || || |||||||||||||| Sbjct 828 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 769 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 768 GAAAATTTACATT 756 Score = 105 bits (116), Expect = 1e-17 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 1953 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 1894 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 1893 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 1834 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | ||| || || |||||||| || || || |||||||||||||| Sbjct 1833 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAAGTCTTAAC 1774 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 1773 GAA-ATTTACATT 1762 Score = 105 bits (116), Expect = 1e-17 Identities = 140/193 (73%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| ||||| | ||| || | ||||| |||| || || || ||||| Sbjct 2958 TTCCTTTTAAATGTTATAGTCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 2899 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 2898 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 2839 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | ||| || || |||||||| || || || |||||||||||||| Sbjct 2838 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTT-CCAGTCAAAGTCTTAAC 2780 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 2779 GAAAATTTACATT 2767 >seq507 Length=36014 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||||| || || | ||| || | ||||| |||| || || || ||||| Sbjct 35679 TTCCTTTTAAATGTTATAATCTGAAAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAA 35620 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || || ||| || || || |||||||||| || || || || || | Sbjct 35619 AATGAGTCTTTATTAATCAGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGC 35560 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || |||||||| || | ||| || || |||||||| || || || ||||| |||||||| Sbjct 35559 GTCAATAGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCAGTCAAGGTCTTAAC 35500 Query 283088 GAATATCTGCATTT 283101 ||| || | ||||| Sbjct 35499 GAAAATTTACATTT 35486 >seq114 Length=165420 Score = 87.8 bits (96), Expect = 4e-12 Identities = 101/134 (75%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 || || || |||||||||| || || || || || | || |||||||| || | ||| Sbjct 149615 GGGATTCCTTCCTTGTCTTAAATTTTAGCCTTGACAGCGTCAATAGTGTCTGATGGTTCA 149556 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA---TTTTCATA 283106 || || |||||||| || ||||| ||||| ||||||||||| || |||| |||| | | Sbjct 149555 ACATCAAGAGTGATGGTTTTACCAGTCAAGGTCTTAACGAAAATTTGCATATTTTTTAAA 149496 Query 283107 TACAAATAtttttt 283120 || |||| || ||| Sbjct 149495 TA-AAATGTTATTT 149483 >seq2141 Length=1079 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 36957 GCTTTTGAGGGAGCACTGAAGCTCAAAGAAATCTCTTACATTCACGCGGAGGGCTTCCTG 37016 ||| |||| || ||||||||||| |||||||| ||||| ||||||| || || | | Sbjct 851 GCTCTTGAAGGTGCACTGAAGCTAAAAGAAATTGCTTACGTTCACGCTGAAGGATACGCA 910 Query 37017 GGAGGTGAGTTAAAACACGGTCCTCTTGCTCTTCTCGATGA 37057 | || |||||||||||||| || | |||||| ||||||| Sbjct 911 GCTGGAGAGTTAAAACACGGACCAATCGCTCTTATCGATGA 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046707736982284