Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq253 372 3e-98 seq25 363 2e-95 seq138 87.8 2e-12 >seq253 Length=82967 Score = 372 bits (412), Expect = 3e-98 Identities = 642/932 (69%), Gaps = 44/932 (5%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || |||| || || ||||| ||| || ||||| | ||||||||||||||| || |||| Sbjct 29934 TACTCATGACTCCAGCTTTTTAATAATCTCCAACTCTTCTTTCGAAAAAATTAGTTTTAC 29875 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC 23320 | | ||| ||||| | ||||| | ||||| ||||| | |||||| | |||| Sbjct 29874 CTTGTAAAGATATCATATCCATCCATTCAAAAGGATTCTTTGAATTATAAAT---TTTAG 29818 Query 23321 ATGAT---AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAAT 23377 | | ||| | || | |||||||| |||||||||||||||| ||||| || Sbjct 29817 GAGCTCCTAATGCAAATATTAATCTATCTGCAACAAATTCAATATATTATTTCATCATAT 29758 Query 23378 CATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGG 23437 | | || ||||| |||| || ||||| | || ||| | ||| ||||||||| Sbjct 29757 TAGAATTCATACCAATTAATTCTACTGATAAAGCTTCACTAATAAATTCTTTTTCAATTT 29698 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 ||||||| | |||||||| | ||| || | ||| | || |||||| | Sbjct 29697 CAACAGCAGATGAAATTATTTCATGAATTCTTTAATTACTTAATTTATTGATTAAATGTT 29638 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | || ||| || || || ||| || |||||||| || ||| |||||||| | Sbjct 29637 TGTAAAGTAGACAAGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTG 29578 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 ||||||| | ||| ||||| ||| || |||||| ||||| || || ||| |||||| | Sbjct 29577 AAAATGTGAGTCCAGGCATCAATGATCTTTTTTTTATCCAGAAAATGGCACAAAATGAAC 29518 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | |||||||| ||||| ||||||| ||||| || | | | | | |||||| ||| Sbjct 29517 CAGAAAAGAATATACCTTCAACAGAAGCAAAAGCAATTAATCTTTCAGCAAATGAATCAT 29458 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA-CACTCAATTGTT 23736 ||| || | |||||||| | | ||| | |||||| || || | || || | | Sbjct 29457 TATCATTA---ATCCATTTCATAGCCCACATTGCCTTCTTTTGTATAACAGGCACAT-TA 29402 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 ||||| || | | ||| || ||||||| | | ||| ||||| || |||||||| | | Sbjct 29401 TCAATAGCATGAAGTAGATAATTTTTTTCATTTTCATCAGTTATGTAAGTATCAATCAAT 29342 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 | ||| |||| ||||||||||| || ||||| | || ||| ||||| ||||||||| Sbjct 29341 AGTGAATAGGTTTCTGAATGAATATTCTCCATAGCTAACTAAAATCCATAGAAACATCTA 29282 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | || ||| || || ||||| || ||| || ||||| || ||||||||| Sbjct 29281 GCTTCTGGAACTTAAACTTCTGTACAAAATTATTAAGCCAAGTTTTCATTCACAATACCA 29222 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAAT 23976 |||||||| |||||||| ||||| ||||| || |||||||| ||||||| | | | | Sbjct 29221 TCACTAGCTGCAAAGAAGGCAAGTACATACTTAATAAAATGCTTTTCATCTGAGGTAAGT 29162 Query 23977 TTTTTCCAATCATTAATATC------TTTT-----------------------GATAAAT 24007 |||| |||||| |||| ||| |||| |||||| Sbjct 29161 TTTTCCCAATCTTTAAGATCCTAAAATTTTATTACTTTTATTATCTTACTTAATATAAAT 29102 Query 24008 CAACTTCATCAACTGTCCAAAAACTTGC--CAAGGCACGCTTATACATTAGCCAAATATC 24065 | | ||| ||| ||||||| |||||||| | | | |||||||| ||||||||| Sbjct 29101 CTATTTCTTCAGCTGTCCAGAAACTTGCTTTATGTTA--TTTATACATATTCCAAATATC 29044 Query 24066 ATTATGTTGTATTGGAAATATTACGAATCTAT 24097 ||| | || |||||||| | ||| ||||||| Sbjct 29043 ATTGTATTTAATTGGAAAGAGTACAAATCTAT 29012 >seq25 Length=399112 Score = 363 bits (402), Expect = 2e-95 Identities = 644/938 (69%), Gaps = 51/938 (5%) Strand=Plus/Minus Query 23201 TATTCATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTAC 23260 || ||||||| || |||||| || || ||||| | ||||||||| ||||| || |||| Sbjct 189022 TACTCATAACTCCAGCTTTTTGGTAATCTCCAACTCTTCTTTCGAAGAAATTAGTTTTAC 188963 Query 23261 CCTCTAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTAC 23320 | | ||| || || | ||||| | ||||| ||||| | |||||| | |||| Sbjct 188962 CTTATAAGGAGATCATATCCATCCATTCAAAAGGATTCTTTGAATTATAAAT---TTTAG 188906 Query 23321 ATGAT---AATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAAT 23377 | | ||| | || | ||||||||||||||||||||||||| ||| |||| Sbjct 188905 GAGCTCCTAATGCAAATATTAATCTATCTGCTACAAATTCAATATATTATTTCATTAAAT 188846 Query 23378 CATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGG 23437 | | || || || |||| || ||||| | || ||| | ||| ||||||||| Sbjct 188845 TAGAATTCATTCCAATTAATTCAACTGGTAGAGCTTCACTGATAAATTCTTTTTCAATTT 188786 Query 23438 AAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAAATACT 23497 ||||||| | ||| |||| | ||| || | ||| | || ||||| | Sbjct 188785 CAACAGCAGATGAAATAATTTCATGAATTCGTTAATTACTTAATTTATTAACTAAATGTT 188726 Query 23498 TAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAG 23557 | | | | ||| || || || ||| || |||||||| || ||| |||||||| | Sbjct 188725 TGTAAAGAAGACAAGCGAAGTCTGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTG 188666 Query 23558 AAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATC 23617 |||| || | ||| ||||| ||| || |||||| ||||||||||| ||| |||||| | Sbjct 188665 AAAAGGTGAGTCCAGGCATCAATGATCTTTTTTTGATCCAAAATATAGCACAAAATGAAC 188606 Query 23618 CGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCAT 23677 | ||||||||||| || ||||||| |||||||| | | | | | |||||| ||| Sbjct 188605 CAGAAAAGAAAATGCCTTCAACAGAAGCAAAGGCAATTAATCTTTCAGCAAATGAATCAT 188546 Query 23678 TATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATT---TTACACACTCAATTG 23734 ||| || | |||||||| ||| ||| | || ||| || ||||| | || | Sbjct 188545 TATTATTA---ATCCATTTCATTGCCCACATTGCTTTCTTTTAAATTACAGGCACATTA- 188490 Query 23735 TTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTA 23794 || || || | | ||| | ||||||| | | ||| |||||||| |||||||| | Sbjct 188489 --TCTATAGCATGGAGAAGATAGTTTTTTTCATTTTCATCAGTTATATAGGTATCAATCA 188432 Query 23795 GTAAACT--ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACA 23852 ||| | ||| |||||||||||||||| || ||||| || | ||| ||||||||||| Sbjct 188431 --AAAGTGAATATGTTTCAGAATGAATATTCTCCATAGCCATTTAAAATCCATAAAAACA 188374 Query 23853 TCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAAT 23912 ||||||||||| | ||| || || || | ||| || ||| || ||||| || || || Sbjct 188373 TCTAGCTTCAGGAACTTGTACTTCTGTACAGAATTATTAAGCCAAGTTTTCATTTACTAT 188314 Query 23913 ACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGA 23972 ||||||||| || |||||||||||||| ||||| || ||||| || ||||||| | | Sbjct 188313 ACCATCACTTGCTGCAAAGAAAGCAAGGACATACTTAATAAAGTGCTTTTCATCTGAGGT 188254 Query 23973 TAATTTTTTCCAATCATTAATATC------TTTT----------------------GATA 24004 | ||||| |||||| |||| ||| |||| | | Sbjct 188253 GAGTTTTTCCCAATCTTTAAGATCCTAAAATTTTATTACTTTAATATAATACCTAATACA 188194 Query 24005 AATCAACTTCATCAACTGTCCAAAAACTTGC--CAAGGCACGCTTATACATTAGCCAAAT 24062 |||| | ||| ||| ||||||| |||||||| | | | ||||||||| |||||| Sbjct 188193 AATCTATTTCTTCAGCTGTCCAGAAACTTGCTTTATGTTA--CTTATACATATTCCAAAT 188136 Query 24063 ATCATTATGTTGTATTGGAAATATTACGAATCTATCAG 24100 |||||||| || |||||||| | ||| ||||||| || Sbjct 188135 ATCATTATATTTGATTGGAAAGAGTACAAATCTATTAG 188098 >seq138 Length=141258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 64466 ATAGTTGAATTTTCTGAAAATATGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTA 64525 || ||||||||| ||| || ||||| ||| |||||| ||||| ||||| |||| ||| Sbjct 128266 ATTGTTGAATTTAGTGAGAAAATGGCAAATTTAGGAAAGATTGTTATTGTGGCAGCTTTA 128325 Query 64526 GATGCGACATATAAAAGAGAACCATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAA 64585 |||| || | | | ||| |||| ||| ||| || ||||| || |||| || |||||| Sbjct 128326 GATGGTACTTTTGACAGAAAACCTTTTCATAACATATTAAATTTAATTCCTTTGGCTGAA 128385 Query 64586 AAAGTAATAAAATTAAATGCTATATGTAAAATATGTTTCAAAGA---TGCTGCATTTACT 64642 ||| |||| | | ||| | ||| | ||| | ||| ||| |||||||| Sbjct 128386 CGTATAACAAAACTTACTGCAGTTTGTTGGTTTTGTAAAAGAGAAAATGCATCATTTACT 128445 Query 64643 AAAAGATTA 64651 |||||| || Sbjct 128446 AAAAGAATA 128454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521472707364400