Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20biaurelia_20[genbank_20GCA_5F000733385.1_202014-07-25] 2,346 sequences; 76,963,137 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq7 123 3e-23 seq35 87.8 2e-12 >seq7 Length=634827 Score = 123 bits (136), Expect = 3e-23 Identities = 361/562 (64%), Gaps = 12/562 (2%) Strand=Plus/Minus Query 155893 TTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTT 155952 ||||||| |||||||| | ||||| | || ||| || | ||||||||||| | |||| Sbjct 210878 TTTCATCTGGTAATCCTACCTCTATATGCACTTCAAATCTTCCAGGTCTTAAAACAGCTT 210819 Query 155953 CGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTA 156012 | |||||||| || ||| || |||||||| || | | ||| || |||||||| | || Sbjct 210818 CATCAATTAAATCTTTTCTATTTGTCATACCAATCACAAGAATATTATTTAAAGAATTTA 210759 Query 156013 CACCGTCTATTTTAGACAATAATTGATTGACTACGGCGTC-----GTGCGTGGCGTTATC 156067 |||| ||||| | || ||||||| ||| || || || | | | | || Sbjct 210758 CACCATCTATCATTGATAATAATTAATTAACAACATTATCATATGCTCCTACACCTGATG 210699 Query 156068 A-------CCGCGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATC 156120 | || | | |||||| | |||||| |||||||| || || || | |||||| Sbjct 210698 AAACAGATCCTCTCTATTTACAAATAGCATCCATTTCATCAAATACAATTATATGTAATT 210639 Query 156121 CGCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGT 156180 | || | ||| || | || |||| ||| ||| ||| | | Sbjct 210638 CACTTTCATCACCTAAAGTTTCTTAATCCTTTATTGCATCTTCAAATAATTTTCTAATAT 210579 Query 156181 TAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGG 156240 | | || | || || ||| |||| | |||| ||| || || ||||| || || | Sbjct 210578 TCTCCTCAGCCTCTCCTACAAATTTACTAAATATTTCTGGTCCATTAACAATCTTTGGAG 210519 Query 156241 GTCGTGATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGAG 156300 ||| | | | || ||| || | | | || || || ||||| || ||||| | Sbjct 210518 GTCTAGCTCTCAATACTTTTGCTAACTATCTTGCAATCAAAGTTTTTCCTGTTCCAGGTG 210459 Query 156301 GTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCAGTTATTTCTACCG 156360 | || ||||| |||| |||||| |||||||| || ||||| || | || | | Sbjct 210458 GACCATATAATAATAATCCTTTAATATGTTTTATTCCAAATTTCTCTAAAAATTATTATG 210399 Query 156361 GAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATCCCC 156420 ||| | ||| | | ||||||||||| ||| || | ||||||||||| || || | Sbjct 210398 GAAATCTTCTAGTTGAAAATGCTCTTCTAAATATATTTGCTAATTCTTTATCTAAACCTC 210339 Query 156421 CCACACCCATTTCCTCAAAATT 156442 | || || | || |||||||| Sbjct 210338 CTACTCCTAATTTATCAAAATT 210317 >seq35 Length=366584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 155890 CCTT-TTCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAAT 155948 |||| |||||| |||||||| | ||| || | | ||| || | || ||||| |||| Sbjct 197030 CCTTGTTCATCAGGTAATCCTACTTCAATATGAACTTCAAATCTTCCTGGTCTCAATACA 197089 Query 155949 GCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGAT 156008 || || ||||||||||| ||| || |||||||| || | ||| || || || | ||| Sbjct 197090 GCCTCATCAATTAAGTCTTTTCTATTAGTCATACCAATAACTAATATATTATTAAGAGAA 197149 Query 156009 TCTACACCGTCTATTTTAGACAATAATTGATTGACTAC 156046 | || || || || |||||| ||||| |||||| || Sbjct 197150 TTGACTCCATCAATCATAGACAGTAATTAATTGACAAC 197187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667055638019760