Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq10 120 3e-22 >seq10 Length=460275 Score = 120 bits (132), Expect = 3e-22 Identities = 519/808 (64%), Gaps = 22/808 (3%) Strand=Plus/Plus Query 16625 TCTTCATCCAATGAAAATGTGTTATCTTGTTTATGAA-CA--ACACCCATTCTTTGGTAA 16681 ||| |||||| | |||| ||||| | ||| | | || ||||| | ||| |||| Sbjct 100831 TCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAGTAA 100890 Query 16682 TCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAA 16741 || | || | | ||||||| ||||| ||||| || | || || || | ||||| | Sbjct 100891 TCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATCCAC 100950 Query 16742 TCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTAT 16799 || |||||||| | | ||||||| ||| ||| ||| || || |||| ||||| Sbjct 100951 TCGAAAGGATTCTTCACATTGAAAATCTTTG-GAGCACCA-AGAGCGAAAATTAGTCTAT 101008 Query 16800 CCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCG 16859 | || |||||||| || ||||| ||| | | | |||||||| || | ||| | Sbjct 101009 CAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTACTG 101068 Query 16860 GAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAA 16919 | | ||||| | | ||| | || ||| |||| || |||||| | | Sbjct 101069 GTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATTTCATGGA 101128 Query 16920 CTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAAT 16979 || || | ||| || ||| | ||| || | | | ||| || ||||| || Sbjct 101129 TTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAAATCAGTAT 101188 Query 16980 GTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 ||||||| || ||||| ||||| | ||| || || ||||| | || ||||| | Sbjct 101189 GTAATCCTTCATCTCT--TGATATCAATTCATTGGAGAATGTTAGTCCTGGCATAAGTGA 101246 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 || || || | |||||| || || || || ||||| ||||| || || || || | Sbjct 101247 TCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTCAACAGC 101306 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC 17157 || || || |||| || ||| || | | || || | | ||||||||| | Sbjct 101307 AGCGAAAGCAATTAGTCTTTCAGCAAATGAA---TCATTATCATTGATCCATTTCATTGC 101363 Query 17158 CCACTCGGCTTTTTGCTTTATGCAATCCAT---CGTT-TCTATGGCCTTAAATAATTTCT 17213 ||| || || |||| || | | || | || || ||||| | | ||| | | Sbjct 101364 CCATGATGCCTT---CTTT-TGAATTACAGGCACATTGTCAATGGCATGGAGTAAGTAAT 101419 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 |||||| | | || | || || ||||| || | || || |||| || |||| Sbjct 101420 TTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAATGTA 101479 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 | || |||||||| || | |||||| || || |||| |||||| | ||||||||||| Sbjct 101480 TATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTTCTG 101539 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 ||||| ||| |||| || || || || || || || || || || || || |||| Sbjct 101540 TACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAGCCA 101599 Query 17394 ATATATGCTTAATGAAATATTTTTCGTC 17421 ||| || ||||| || | ||||| || Sbjct 101600 ATACATATTTAATAAAGTGCTTTTCTTC 101627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517540573338360