Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq10 181 1e-40 >seq10 Length=460275 Score = 181 bits (200), Expect = 1e-40 Identities = 580/888 (65%), Gaps = 49/888 (6%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||| |||||||| || | | ||||||||||||| |||||||| | | || || | | Sbjct 100883 TTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATAT 100942 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| | || || ||||| | | ||||||| | || ||| ||| || | || Sbjct 100943 CCATCCACTCGAAAGGATTCTTCACATTGAAAATCT-TTGGAGCACCA-AGAGCGAAAAT 101000 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAA-GTCGCAATTAATTCCTATAA 16088 || |||||| || |||||||| || ||||| ||| | || | |||| ||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTG-AATTCATTCCAATTA 101059 Query 16089 GTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGA 16148 | ||| || | |||| | | |||| | ||| || |||| || | ||| | Sbjct 101060 ATTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAA 101119 Query 16149 TATCGGTGGCTCGTGTTTCA---GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG 16205 | || ||| | | ||| | || || ||| | | || || | | || ||| | Sbjct 101120 TTTCA-TGGAT--TCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 16206 CGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCC 16263 | || || ||||| |||||| ||||| ||||| | ||| ||||| || |||| || Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCT--TGATATCAATTCATTGGAGAATGTTAGTCC 101234 Query 16264 TGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATAT 16323 |||||| | || || || | ||| || || ||| ||| || || || ||||| || Sbjct 101235 TGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGAT 101294 Query 16324 ACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAAT 16383 || ||||||| || ||||| |||| || ||| || | | | ||| | ||| || Sbjct 101295 GCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---AT 101351 Query 16384 CCATTTCTGTACCCATTCGGCTTTTTGTTTTAT-ACAATC-CATCGTTTCTATGGCCTTA 16441 ||||||| | ||||| || || | || || ||| | ||| || | ||||| | Sbjct 101352 CCATTTCATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGT--CAATGGCATGG 101409 Query 16442 AACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATT 16501 | || | | |||||| | ||| | || || |||||||||| | | || || Sbjct 101410 AGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTT 101469 Query 16502 TCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATT 16561 || || ||||| || || ||||| || | |||||||||||| |||| || || | ||| Sbjct 101470 TCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATT 101529 Query 16562 TGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 || ||||| | ||| ||| || | ||||||||| || || || ||||| |||||| Sbjct 101530 TGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCA 101589 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCT 16681 || || ||||||| | ||||| || | ||||| || || | | | | ||||||| Sbjct 101590 AAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCT 101649 Query 16682 TTTAAATCTTTGGAT------------------------ATATCCACTTCTTCTGGCGTC 16717 || | ||| | | || | ||| | ||| || | ||| Sbjct 101650 TTAAGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTC 101709 Query 16718 CAAAAGCTAGCCACTGCCTT-TTTATACATTTTCCAAATATCATTGTA 16764 |||||||||||| || || ||| ||||| ||||| ||||||||||| Sbjct 101710 CAAAAGCTAGCC-TTGTGTTATTTGTACATATTCCAGATATCATTGTA 101756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511409432887640