Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq48 132 3e-26 >seq48 Length=276533 Score = 132 bits (146), Expect = 3e-26 Identities = 423/644 (66%), Gaps = 18/644 (3%) Strand=Plus/Minus Query 101702 TAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGA 101761 || ||||||| |||||| | ||| | |||||| ||| | | |||||| | | Sbjct 43106 TATATGTGAGTATCTCCAAGTACATGTACAAACTCACCAAGTCCAAGATTACATTCCTTG 43047 Query 101762 GCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATA 101821 || | | |||||| | || ||| || |||| || || || ||||| || || | | Sbjct 43046 GCTAGTAAATAAGTTAGTAAAGCATAACTGGCAACATTGAAAGGTACTCCCAATCCAAAA 42987 Query 101822 TCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTT 101881 ||| |||||| | ||||| ||| | |||| | | |||||||||| | Sbjct 42986 TCACATGATCTCTAATACATCATACAACTTAAACGACCATTAGACACATAAAATTAAGAC 42927 Query 101882 AATACATGACAAGGCGGCAACACCAT----TTTAGGAATGTCTGAAACATTCCAAGCACA 101937 |||||||||||||| || || |||| |||| || |||||| ||||||||| | Sbjct 42926 AATACATGACAAGGAGGTAATGCCATAATCTTTA--AA--TCTGAAGGATTCCAAGCTGA 42871 Query 101938 CATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTA-TCAATCAACTGTTTTAATT 101996 | | || |||||| || | || ||||||||| || | ||| | | ||| |||| Sbjct 42870 TAAACAGATTCTTCTA-CTATCCGGATTGTTTTTAAGTTAGTGAATTACATCTTTCAATT 42812 Query 101997 GGTCAACTCCTTCTCCTTTATAATCGCGCCCAAC-ACCTTTATATTCTGCTCCGAAATGC 102055 | || ||||||| | | ||||| || || | | | |||| ||| || ||||| Sbjct 42811 GATCGACTCCTTTATTTGTGTAATC-TGCATTACAATCAGTGTATTATGCACCAAAATGT 42753 Query 102056 CTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGT 102115 ||||| | ||||||||| | ||||| | ||| |||| |||| | | || |||| Sbjct 42752 CTCCATTAAAATCCATATATTGGTCCTAAATCATTTTCAGCTCTATTCTTTAATCCAATG 42693 Query 102116 TTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGA--TA 102173 |||| | || |||| ||||||| | ||||| || | | | || | | || Sbjct 42692 CTATCCAGGTATTCCCTAGTTCCATTCCCTTCCCATATCTTTA--TCTTCTTATCAAGTA 42635 Query 102174 GCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCC 102233 | | | | | || ||||| || ||||| |||| ||||||||||||||| | Sbjct 42634 GAGTTCTACCATTTGTCTCACCTCTTATGAACCATAACAATTCTTCAACAACACCACGAA 42575 Query 102234 AAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCATTTTCTAAACTAAACCTAGACTGTG 102293 | |||||| | ||||| ||||| | ||||||| |||||| | | | || | | ||| Sbjct 42574 AGAATACTTTTTTAGTTGTTAATAATGGAAATGAATTTTCAAGATTGAAAC-GCATTGTC 42516 Query 102294 T-TCCAAAAATACTCAGTGTTCCAGTCCCTGTTCTGTCATTTTT 102336 | |||||| | | |||||| |||||||| |||||||| Sbjct 42515 TATCCAAATAAGGATATTGTTCCTACACCTGTTCTATCATTTTT 42472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361247779064027