Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 307 1e-78 seq56 262 5e-65 >seq10 Length=460275 Score = 307 bits (340), Expect = 1e-78 Identities = 620/919 (67%), Gaps = 42/919 (5%) Strand=Plus/Plus Query 23843 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 23902 ||||| ||| ||||| || | | ||||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 23903 TTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAA- 23961 ||||| | ||| | ||||| | ||||| | || |||| | |||| |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAAT-CTTTGGAGCACCAAGAGCGAAAA 100999 Query 23962 TCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAA 24021 | | |||||| || ||||| || || ||| |||||| | | |||||||||| || | Sbjct 101000 TTAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTA 101059 Query 24022 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 24081 || ||||| | || || ||| ||||| | |||||||| || || || |||| Sbjct 101060 ATTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAA 101119 Query 24082 TAGATCTTACTGTTTCTTCACTCGG----TGGATACAATAAATGTTTAAACATCAAACAT 24137 | | | | ||||| | || | || | | ||| || | | ||||| Sbjct 101120 TT----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAA 101175 Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || ||||| |||| || || ||||| || ||||| ||||| || || ||||| Sbjct 101176 GCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCT 101235 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || | |||||| | |||||| |||| ||| || ||||| ||||| || Sbjct 101236 GGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATG 101295 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCAC 24317 ||||| || || || || ||||| |||||||| || | | | |||| ||||| Sbjct 101296 CCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCAT 101355 Query 24318 TTTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || ||||| |||||||||| ||||| |||| | || || |||| | Sbjct 101356 TTCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGT 101412 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 | || ||||||||||| ||| | | || ||||||||||| ||| ||| |||| Sbjct 101413 AAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCA 101472 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 ||||| || ||||| ||||| |||| |||||| ||||||||||| || || | ||| || Sbjct 101473 GAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGA 101532 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 |||||| |||| ||| ||| |||||| || ||||| || ||||| |||||||| ||||| Sbjct 101533 ACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAG 101592 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || |||||||||| ||| ||||| | ||||| |||| ||| ||| | |||||| || Sbjct 101593 AAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTA 101652 Query 24615 ATAT------------------------CTTTAGATATATCCACTTCTTCCACTGTCCAA 24650 | || ||| | | | ||| | ||| || | |||||| Sbjct 101653 AGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAA 101712 Query 24651 AATGATGCCTCTGCCTT-TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || |||| || || ||| |||||||||||||| |||| || | |||||| || | Sbjct 101713 AAGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAG 101771 Query 24710 AACAAATCTATTTGGATTT 24728 |||||| |||||||||||| Sbjct 101772 AACAAACCTATTTGGATTT 101790 >seq56 Length=254943 Score = 262 bits (290), Expect = 5e-65 Identities = 1136/1766 (64%), Gaps = 69/1766 (4%) Strand=Plus/Minus Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 53035 || | |||| || |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 53036 TCTTCTGGAAGGTTTG-----TATTCTGAATAGATCCACCATCTACCATAATCCTATTCT 53090 | |||||| | ||| |||| | || || ||| || | || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 53091 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 53150 |||| || |||| | ||| || ||| | | || | ||| ||||||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 53151 CTTGA-AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 | ||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||||||| ||||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 53270 CTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCAAAGA 53326 |||||| | || ||||| ||||| ||| || || ||| ||||||| || | | Sbjct 217378 GAATTTCTCATTCC--ATGTT-TGATTATATTTTATTTCAAGGAATCCCAAT--CATACA 217324 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT-TACTGGCGTACGATCC 53385 | || ||| || || || || || | | || | || ||| Sbjct 217323 TT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT-TCC 217266 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA-ATGCAC 53444 | | |||| || || || || || | |||||| |||| || | | | ||| | Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATC 217207 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAA 53502 | |||||||| || || || || | | ||||| |||| | ||| | | || Sbjct 217206 CATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATT--CGAA 217149 Query 53503 TGGATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 53561 || || ||| | | || || || || ||||||| |||||| | || || |||| Sbjct 217148 AGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 53562 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 53621 ||||| | ||||| | || |||| | | ||||||| |||||| |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 53622 TATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC 53681 ||| || || | |||| ||| | ||| | ||| | ||||||||| || Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTC 216970 Query 53682 CATCT--ATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT 53738 |||| ||| |||||| | | ||| ||| || | ||| || || |||| ||||| Sbjct 216969 TATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCAT 216910 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 || | | |||||| || || ||||| || | |||||||| || || |||||||||| Sbjct 216909 CAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAAT 216850 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | | ||||||||| |||| ||||| ||||| || || | || | ||| |||||| Sbjct 216849 TCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTG 216790 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 || | | ||||| || ||| ||| | | | |||||| ||| || | | Sbjct 216789 ATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCTTCCCA 216730 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 | |||| | ||| ||| | ||| ||| | ||||| ||||| || || | | Sbjct 216729 TTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTTAAA 216670 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 || |||||||||| || ||||| | | ||| ||| | || || || |||| || || Sbjct 216669 GCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTACA 216610 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 |||| | |||||||||||| | ||| ||||| |||||| || || | ||| || ||| Sbjct 216609 TAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATTC 216550 Query 54099 CTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 54152 | |||||| || |||| ||| |||| || ||| |||||| ||||||| Sbjct 216549 CATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTTCCA 216496 Query 54153 AGTATATGGTCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGC 54207 |||||| || || | | || ||| | | ||||| | ||| | ||||| || Sbjct 216495 AGTATACGG---CAAATGAA--CCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGC 216441 Query 54208 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 54267 || | |||| | ||| | | ||| || | | ||||| | |||||| || || Sbjct 216440 AGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACG 216381 Query 54268 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTT 54327 ||||| || | | | ||| ||| || | ||||| || || || ||| Sbjct 216380 AATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTT 216321 Query 54328 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 54387 | || | || |||| |||||| || ||||| || || ||||| |||||| | ||| Sbjct 216320 ACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCAT 216261 Query 54388 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAGGTA 54445 | | ||| ||||| |||||||| || || | || | || | ||| ||||| || Sbjct 216260 ATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTT 216203 Query 54446 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCT 54505 |||| ||| || ||||| |||||| || | | || || |||| || |||||| | Sbjct 216202 GGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGA 216143 Query 54506 ATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 54563 | ||| | ||||||||| |||| || | ||||| | || || |||||||||| Sbjct 216142 AGATCATGCTTATGAATTCCAATACT--CACTCTCATTATTAATTGTTGGGGTCTTTCAA 216085 Query 54564 CGATCTTGTTGTTTA--TT--TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 54619 | ||| ||| || || || ||||| | |||| || || || || |||||| Sbjct 216084 ----TTGGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAA 216029 Query 54620 TAGTTGTATGAAAAGTCTCGTTCGTA 54645 | | |||| || | || ||||| || Sbjct 216028 AAATCGTATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593715833478960