Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq39 89.7 4e-13 seq2 87.8 2e-12 >seq39 Length=303829 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 29040 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 29099 ||||||| | || || || ||||| | ||| |||||| |||||||||| ||||| Sbjct 62930 AAGCAAAGATTTAG-GACAAGGAAGGCATTCCCCCCGATCAATAAAGACTTATTTTTGCA 62988 Query 29100 GGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 || |||||||| ||||| | |||| | | ||||||||||| | |||||||| || Sbjct 62989 GGAAAACAACTTGAAGACGGAAGAACTCTTTCAGATTACAATATCTAAAAGGAATCAACC 63048 Query 29160 CTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| | || | ||||| ||||||| Sbjct 63049 CTTCACTTAGTACTTAGATTAAGAGGAGG 63077 >seq2 Length=701642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||| |||| ||| |||| |||||||| || |||||||| || || ||||| | Sbjct 527679 AATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATC 527738 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | | || ||||| || |||||||| | || ||| | Sbjct 527739 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 527798 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 | ||||||||||||| || || ||| || | |||||| | ||| | | || ||||| Sbjct 527799 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 527858 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||| || ||||| || ||||| ||||||| Sbjct 527859 TATTCAAAAAGAATCCACACTTCATTTGGTGTT 527891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428331943791935