Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 100 2e-16 seq39 89.7 4e-13 >seq2 Length=701642 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||| |||| ||| |||| |||||||| || |||||||| || || ||||| | Sbjct 527679 AATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATC 527738 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | |||| ||||| || |||||||| | || ||| | Sbjct 527739 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 527798 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 | ||||||||||||| || || ||| |||| |||||| | ||| | | || ||||| Sbjct 527799 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 527858 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||| ||||| || ||||| ||||||| Sbjct 527859 TATTCAAAAAGAATCCACACTTCATTTGGTGTT 527891 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 |||| |||||||| ||| | || ||||| || || |||||||| || || |||| Sbjct 528397 TAAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTGAAC 528456 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | |||| || | | | |||| ||||| ||||||||||| | || | Sbjct 528457 CATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCG 528516 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 || || ||||||||||||| || || ||| |||| |||||| | ||| | | || | Sbjct 528517 ATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACT 528576 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||||||| ||||| || || ||| | || || Sbjct 528577 ACAATATTCAAAAAGAATCAACACTCCACTTAGTATT 528613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGG-AACCCG 25092 |||| |||| ||| |||| |||||||| || || ||||| || || || |||| Sbjct 528629 AATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGA--CGTTAACCAT 528686 Query 25093 CAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 |||| || | | | | |||| ||||| || |||||||| | || ||| Sbjct 528687 CAGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATT 528746 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 || ||||||||||||| || || ||| |||| |||||| | ||| | | || |||| Sbjct 528747 AATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACA 528806 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||| ||||| || || ||| | || || Sbjct 528807 ATATTCAAAAAGAATCAACACTCCACTTAGTATT 528840 >seq39 Length=303829 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||| | || || || ||||| | ||| |||||| |||||||||| ||||| Sbjct 62930 AAGCAAAGATTTAG-GACAAGGAAGGCATTCCCCCCGATCAATAAAGACTTATTTTTGCA 62988 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 || |||||| | ||||| | |||| | | ||||||||||| |||||||||| || Sbjct 62989 GGAAAACAACTTGAAGACGGAAGAACTCTTTCAGATTACAATATCTAAAAGGAATCAACC 63048 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| | || | ||||| ||||||| Sbjct 63049 CTTCACTTAGTACTTAGATTAAGAGGAGG 63077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410792909882678