Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq10 242 3e-59 >seq10 Length=460275 Score = 242 bits (268), Expect = 3e-59 Identities = 654/992 (66%), Gaps = 45/992 (5%) Strand=Plus/Plus Query 15890 AAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGA 15949 ||||| ||| | || ||| || ||||| | ||| || ||| || ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 15950 TATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATA 16009 || |||| ||||| |||| ||||| || |||||||||| | ||||| | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 16010 AAATCAAAAGGATTTTTTGAACAAT---AGTATTTATCGCATCCCAATTCCAACAATAAT 16066 | || |||||||| || ||| | | | ||| ||| || | | || | || | Sbjct 100948 CACTCGAAAGGATTCTTC--ACATTGAAAATCTTTGGAGCA-CCAAGAGCGAAAATTAGT 101004 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 ||||| || |||||||| || || |||||||| | | |||||||| ||||||| Sbjct 101005 CTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCT 101064 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || | |||||| | | || | ||||| ||| ||| || ||| | || Sbjct 101065 ACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCA-----GATGAAATAA 101119 Query 16187 CTTACTACACTATTTAAC-GGAGGGTTTAATAAG----TGTTTAAACATTATACAAGCAA 16241 || | | | ||| | ||| ||||| | | || || | | || |||||||| Sbjct 101120 TTTCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAA 101179 Query 16242 AATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCA 16301 ||||| ||| |||||||| || || ||| || || || || ||||| || ||||||| Sbjct 101180 AATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCA 101239 Query 16302 TTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTT 16361 | ||| || ||||| |||||||| || || ||| |||||||| ||||| || |||| Sbjct 101240 TAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTT 101299 Query 16362 CAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatt 16421 |||| || || || |||| | || ||| | | | || ||| | ||||||| Sbjct 101300 CAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAA---TGAATCATTATCATTGATCCATT 101356 Query 16422 ttttagcccaatttgctttttgtttAA-CACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 | | ||||| ||| || | || || |||| || || || || |||| | ||| Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACAG-GCACATTGTCAATGGCATGGAGTAAG 101415 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 ||||||||||| || ||| || |||||||| || | | | ||| |||| ||| Sbjct 101416 TAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAA 101475 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || ||||| ||||| || || | ||| ||||| || ||||| ||||| | ||||| ||| Sbjct 101476 TGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACT 101535 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 || | | || || ||||||||| || || || |||||||| || || ||||| || Sbjct 101536 TCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAA 101595 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTTTT---AACCAGTCAGA 16716 || | || | ||||||||| | ||||| | | || || |||| || | | ||| Sbjct 101596 GCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAAGA 101655 Query 16717 ---------------AAAATCTT---TTGATAA--ATCGACCTCTTCTACAGTCCAAAAA 16756 ||||| || || |||| ||| | || || |||||||||| Sbjct 101656 TCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAAAG 101715 Query 16757 GAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816 ||| | ||| ||||| ||||| || || | ||| ||| || |||| |||| Sbjct 101716 CTAGCCTTGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGAACA 101775 Query 16817 TACTTATTTAATGTTGGTTTTAAAATAGGTTC 16848 || ||||| ||||||| ||||||||||| Sbjct 101776 AACCTATTTGGATTTGGTTTCAAAATAGGTTC 101807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462507507852200