Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq48 131 1e-25 >seq48 Length=276533 Score = 131 bits (144), Expect = 1e-25 Identities = 391/593 (66%), Gaps = 9/593 (2%) Strand=Plus/Plus Query 19949 TTATTTTACACAATGGTGTACAAAAAACAGATCGAACCGGAACTGGAACGTTATCTGTAT 20008 |||||| || || || ||||| |||| ||| |||| || ||||| |||| ||| Sbjct 42452 TTATTT--CAGAA-GGAGTACACAAAAATGATAGAACAGGTGTAGGAACAATATCCTTAT 42508 Query 20009 TTGGAATG-CAATCTCGATATAA-CTTGAGAAATGAATTTCCCTTATTAACTACGAAACG 20066 ||||| | |||| || | || ||||| |||| |||||| |||||||| || ||| Sbjct 42509 TTGGATAGACAATG-CGTTTCAATCTTGA-AAATTCATTTCCATTATTAACAACTAAAAA 42566 Query 20067 GGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTC 20126 ||||| | || ||||||||||| || |||||||| || | ||| |||||| Sbjct 42567 AGTATTCTTTCGTGGTGTTGTTGAAGAATTGTTATGGTTCATAAGAGGTGAGACAAATGG 42626 Query 20127 TACCGAGCTTGTAGAAAAAGGAGTTAA-GATTTGGAGCGCACATGGATCTAAGCAATTTT 20185 || || | || || | || ||| ||| ||| | ||||| ||| | ||| Sbjct 42627 TAGAACTCTACTTGATAA-GAAGATAAAGATATGGGAAGGGAATGGAACTAGGGAATACC 42685 Query 20186 TACACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTC 20245 | | |||| |||||| | || | || ||||| || || | ||||||||| Sbjct 42686 TGGATAGCATTGGATTAAAGAATAGAGCTGAAAATGATTTAGGACCAATATATGGATTTT 42745 Query 20246 AATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAG 20305 |||||||||||||||| || |||| ||| || || |||| |||||| Sbjct 42746 AATGGAGACATTTTGGTGCATAATACACTGATTGTAATGCAGATTACACAAATAAAGGAG 42805 Query 20306 TAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTA 20365 | |||||||| || |||| ||| | | | |||||| || || | |||||||| Sbjct 42806 TCGATCAATTGAAAGATGTAATTCACTAACTTAAAAACAATCCGGATAGTAGAAGAATCT 42865 Query 20366 TTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGC 20425 ||||| || ||||| || |||| | | ||||| || ||||| |||||| | Sbjct 42866 GTTTATCAGCTTGGAATCCTTCAGATTTAAAGATTATGGCATTACCTCCTTGTCATGTAT 42925 Query 20426 TATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTG 20485 | | ||||||| || ||||| | || ||| |||||| | |||| || Sbjct 42926 TGTCTTAATTTTATGTGTCTAATGGTCGTTTAAGTTGTATGATGTATTAGAGATCATGTG 42985 Query 20486 ATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTAT 20538 || | ||| |||| || ||||||||| |||| |||||||| | || || ||| Sbjct 42986 ATTTTGGATTGGGAGTACCTTTCAATGTTGCCAGTTATGCTTTACTAACTTAT 43038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399180219852265