Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq10 233 2e-56 >seq10 Length=460275 Score = 233 bits (258), Expect = 2e-56 Identities = 562/836 (67%), Gaps = 27/836 (3%) Strand=Plus/Plus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13918 ||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 13919 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13978 || |||| |||||| |||| |||||||| ||||| |||| || || || | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 13979 AAATCAAATGGATTTGTTGACAT--AAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | || || ||||| || |||| ||| |||| || || || | || | || || Sbjct 100948 CACTCGAAAGGATTC-TTCACATTGAAAATCTTTGGAGCA-CCAAGAGCGAAAATTAGTC 101005 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| |||| || ||||| ||||| ||| | ||||||| || |||| || || Sbjct 101006 TATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTA 101065 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG 14156 | || | | | | | ||||| ||||| |||| ||||| | | | |||||| Sbjct 101066 CTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCA--GATGA-AATAATTT 101122 Query 14157 TA---ATAATTTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGCAAA 14211 | || ||| ||| || || |||| | ||| || | | |||||| ||||| Sbjct 101123 CATGGATTCTTTGATTGGAT--AGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAA 101180 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 |||| ||| | || |||||||| || | ||| || || ||||||| ||||||||| Sbjct 101181 ATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCAT 101240 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 | | || ||||| | |||||| || ||| || || || || ||||| || || || Sbjct 101241 AAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTC 101300 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 ||| ||||| || || |||| || ||| |||| || | || | || |||||||| Sbjct 101301 AACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---ATCCATTT 101357 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCAT----TAAATA 14447 | |||||| | || |||| ||| | | || | ||||| |||| ||| || Sbjct 101358 CATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCATGGAGTAAGTA 101417 Query 14448 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCA 14506 | | || ||| ||| | ||| |||| |||||||| ||| || ||| ||||| Sbjct 101418 ATTTTT--TTCATTTTCATCAGTGA--TGTAAGTATCAATCAAGAGAGA-ATATGTTTCA 101472 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || ||||| |||||||| || || | ||| ||||| |||||||| ||||||| ||| Sbjct 101473 GAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGA 101532 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || |||| | ||| || || || || ||||| || || |||||||| || ||||| Sbjct 101533 ACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAG 101592 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATC 14682 || ||||||| | ||||||||||| | ||||| | | ||||| |||||| Sbjct 101593 AAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATC 101648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482340915218360