Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 141 8e-29 seq2 96.9 3e-15 seq6 95.1 1e-14 seq39 86.0 6e-12 >seq10 Length=460275 Score = 141 bits (156), Expect = 8e-29 Identities = 514/796 (65%), Gaps = 19/796 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 ||||||||| | || ||||| || || || || ||||| ||||| || ||||| || Sbjct 101615 TTTATTAAATATGTATTGGCTTTCTTTGCTGCCAGTGATGGAATTGTCAATGAGAACTTA 101556 Query 57738 GTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAA 57797 | || ||| | |||||| ||| | | || || ||||| || || |||||| || Sbjct 101555 GCATAACAATTCTGTACAGAAGTTCAAATTCCAGAAGCCAGATGTTTCTATGGATTTTAA 101496 Query 57798 GTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAG 57857 | ||||| ||||| | ||||| |||| ||||| || | || ||||| ||| | | Sbjct 101495 ATTGCCATGGAAAATATACATTCTGAAACATATTCTCTCTTGATTGATACTTACATCACT 101436 Query 57858 GACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 || | | || ||| | | || | || || || | |||| | || ||| Sbjct 101435 GATGAAAATGAAAAAAATTACTTACTCCATGCCATTGACAATGTGCCTGTAATTCAAAAG 101376 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 |||||| ||| |||| |||||||| || | | | | || || || || ||| Sbjct 101375 AAGGCATCATGGGCAATGAAATGGATCAAT---GATAATGATTCATTTGCTGAAAGACTA 101319 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGG 58037 || || ||||| || || ||||| || ||||| || || ||| || || |||||| Sbjct 101318 ATTGCTTTCGCTGCTGTTGAAGGCATCTTCTTCTCTGGTTCTTTTTGTGCCATTTTTTGG 101259 Query 58038 ATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGAC 58097 || || || | || ||||| || || || || ||| || |||||||| | || Sbjct 101258 ATCAAAAAGAGATCACTTATGCCAGGACTAACATTCTCCAATGAATTGATATCAAGAGAT 101199 Query 58098 GAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACG 58157 || || | |||||||||||||| || || | ||| || || |||||||||| | Sbjct 101198 GAAGGATTACATACTGATTTTGCTTGTTTACTCTACAAGCATATGGTCAATAAACTATCC 101139 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | | ||| || ||||| | || || || || ||||| || || | | Sbjct 101138 AATCAAAGAATCCATGAAATTATTTCATCTGCTGTTGCTATTGAAAAGGAATTCATTAGT 101079 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAA--CAATGATTTGATGTCAAAGTACATTG 58275 ||||| |||| || | | | || ||||| ||| | ||| | | ||||||| Sbjct 101078 GAAGCATTACCAGTAGAATTAATTGGAATGAATTCAA--CACTCATGAAACAATACATTG 101021 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA---TTACAACACGA 58332 | |||||||| || ||||| | ||| || |||| | | | || ||| || Sbjct 101020 AATTTGTTGCTGATAGACTAATTTTCG--CT-CTTGGTGCTCCAAAGATTTTCAATGTGA 100964 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 | ||||| || || | ||| || |||| || ||| | || || || ||||| ||||||| Sbjct 100963 AGAATCCTTTCGAGTGGATGGATATGATTTCCCTCTAAGGAAAAACCAACTTCTTCGAAA 100904 Query 58393 aaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAGTTGGAGGACGATA 58452 || ||| | || || ||||| || || |||| |||| || | ||| | | || Sbjct 100903 GAAGAGTAGGTGATTACTAAAAAGCTGGTGTCATGA---GTAAAAAATAGGATAAAG-TA 100848 Query 58453 TTTTCACTTTGGATGC 58468 ||| ||| ||||||| Sbjct 100847 TTT--ACTATGGATGC 100834 >seq2 Length=701642 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||| |||||||||||||||| ||||||| ||||| ||||| | || |||||||| Sbjct 527448 AACCATGTAAATTTTCGTAAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACC 527507 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| | || | |||||| | ||| || || ||||| | || ||||| Sbjct 527508 ATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCGA 527567 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 | | | || || |||||||| ||| | || |||||| | || | || || Sbjct 527568 TTAATAAAGACTTATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACACTCTCAGACTA 527627 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||||||||| || || || | ||| | ||||| || || || Sbjct 527628 CAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGG 527678 Score = 93.3 bits (102), Expect = 4e-14 Identities = 169/243 (70%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 31180 AATTGAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGA 31239 |||| ||| ||| |||||||||||||||||||| | ||||| ||||| ||||| | || Sbjct 528390 AATTAAAT-AAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGA 528448 Query 31240 CGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGT 31299 |||||||| || |||| | || | |||||| | ||| || || ||||| | Sbjct 528449 TGTTGAACCATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAAT 528508 Query 31300 GCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---AC 31356 || ||||| | | | || || ||||| || ||| | || ||||| | | | || Sbjct 528509 CCCACCCGATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGA-TGGAAGAACAC 528567 Query 31357 TATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGG 31416 | | | || || || |||||||||||||| || || || | ||| | ||||| || || Sbjct 528568 TCTCA--GACTACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGG 528625 Query 31417 CGG 31419 || Sbjct 528626 TGG 528628 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||| ||||| ||||| ||||||| ||||| ||||| | || |||||||| || Sbjct 527680 ATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 527739 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||| ||||| | || ||||| | Sbjct 527740 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTAA 527799 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGATTAT 31369 | | || || ||||| || ||| | || ||||| | | || || | || | || Sbjct 527800 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGA-TGGAAGAACACTCTCAG--ACTAC 527856 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||||||||| || |||||| |||| | ||||| || || || Sbjct 527857 AATATTCAAAAAGAATCCACACTTCATTTGGTGTTGAGACTTAGAGGTGG 527906 >seq6 Length=529034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||||||||| ||||| || || || ||||| ||||| | || |||||||| || Sbjct 10870 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 10811 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||||||||| | || ||||| || Sbjct 10810 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 10751 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | | || || || ||||| || | || |||||| | || | || || || Sbjct 10750 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 10691 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || ||||| | || |||||| |||| || || Sbjct 10690 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG 10644 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||||||||| ||||| || || || ||||| ||||| | || |||||||| || Sbjct 11852 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 11793 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||||||||| | || ||||| || Sbjct 11792 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 11733 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | | || || || ||||| || | || |||||| | || | || || || Sbjct 11732 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 11673 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || ||||| | || |||||| |||| || || Sbjct 11672 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG 11626 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||||||||| ||||| || || || ||||| ||||| | || |||||||| || Sbjct 14632 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 14573 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||||||||| | || ||||| || Sbjct 14572 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 14513 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | | || || || ||||| || | || |||||| | || | || || || Sbjct 14512 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 14453 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || ||||| | || |||||| |||| || || Sbjct 14452 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG 14406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||| |||| || || ||||| || || || ||||| ||||| | || |||||||| Sbjct 11102 AAACATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACC 11043 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | | || | |||||| | ||| ||||||||||| | || ||||| Sbjct 11042 ATCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGA 10983 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || | | || || || ||||| || | || |||||| | || | || || Sbjct 10982 TCAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTA 10923 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| ||||| || ||||| | || || ||| |||| || || Sbjct 10922 CAATATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 10872 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||| |||| || || ||||| || || || ||||| ||||| | || |||||||| Sbjct 12539 AAACATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACC 12480 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | | || | |||||| | ||| ||||||||||| | || ||||| Sbjct 12479 ATCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGA 12420 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 || | | || || || ||||| || | || |||||| | || | || || Sbjct 12419 TCAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTA 12360 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||||||| ||||| || ||||| | || || ||| |||| || || Sbjct 12359 CAATATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 12309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||||||||| ||||| || || || ||||| ||||| | || |||||||| || Sbjct 12307 ATGTAAATTTTCGTTAAGACACTCACTGG-AAAACAATCACTCTTGATGTTGAACCATCA 12249 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | |||||| | ||| ||||||||||| | || ||||| || Sbjct 12248 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 12189 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | | || || || ||||| || | || |||||| | || | || || || Sbjct 12188 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 12129 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || ||||| | || || ||| |||| || || Sbjct 12128 ATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 12082 >seq39 Length=303829 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| ||||||| || || || | ||||| || || ||||| | || || ||||| || Sbjct 62851 ATGTAAATTTTTGTTAAAACCTTAACAGGTAAGACAATCACACTTGATGTCGAACCTTCT 62910 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| || ||| | ||||||||||||| | || ||||| || Sbjct 62911 GACACCATCGATGCAGTTAAAGCAAAGATTTA-GGACAAGGAAGGCATTCCCCCCGATCA 62969 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 | | || || || || || ||||| | |||||| | ||| | ||||| || Sbjct 62970 ATAAAGACTTATTTTTGCAGGAAAACAACTTGAAGACGGAAGAACTCTTTCAGATTACAA 63029 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || |||| ||||| || ||||| | ||||||||| | || || ||| Sbjct 63030 TATCTAAAAGGAATCAACCCTTCACTTAGTACTTAGATTAAGAGGAGGT 63078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445762070493840