Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq48 100 6e-16 >seq48 Length=276533 Score = 100 bits (110), Expect = 6e-16 Identities = 367/566 (65%), Gaps = 19/566 (3%) Strand=Plus/Plus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 |||||| | || | |||||||| || |||||| ||||| | |||||| ||| Sbjct 42462 AGGAGTACACAAAAATGATAGAACAGGTGTAGGAACAATATCCTTATTTGGATAGACAAT 42521 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAG 35256 | | ||| |||| || | | ||||| | | || || || ||| | |||| | Sbjct 42522 GCGTTTCAATCTT---GAAAATTCATTTCCATTATTAACAACTAAAAAAGTATTCTTTCG 42578 Query 35257 AGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGC 35316 || ||||| |||||| | | |||||||| || || | ||| | | | ||| | Sbjct 42579 TGGTGTTGTTGAAGAATTGTTATGGTTCATAAGAGGTGAGACAAATGGTA--GAACTCTA 42636 Query 35317 CAAGA--AGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGA 35374 | || |||||||| | || ||| | | ||||| | |||||| |||| || | Sbjct 42637 CTTGATAAGAAGATAAAGATATGGGAAGGGAATGGAACTAGGGAATACCTGGATAGCATT 42696 Query 35375 GGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCAT 35434 || ||| | ||||||| || ||||| ||||| |||| ||||| ||||| | ||| Sbjct 42697 GGATTAAAGAATAGAGCTGAAAATGATTTAGGACCAATATATGGATTTTAATGGAGACAT 42756 Query 35435 TTTGGTGCTGAATA---TGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAA 35491 |||||||| |||| |||| ||| | | ||||| || || || | |||||| Sbjct 42757 TTTGGTGCATAATACACTGAT---TGTAATGCAGATTACACAAATAAAGGAGTCGATCAA 42813 Query 35492 TTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGA--TGATTATGA 35549 ||| || || | | || | | | ||||| ||| |||||| | || |||| Sbjct 42814 TTGAAAGATGTAATTCACTAACTTAAAAACAATCCGGATAGTAGAAGAATCTGTTTAT-- 42871 Query 35550 CGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTG-CT 35608 | || ||||||||| ||| | | ||||||| | ||||| || || | | || || Sbjct 42872 CAGCTTGGAATCCTTCAGATTTAAAGATTATGGCATTACCTCCTTGTCATGT-ATTGTCT 42930 Query 35609 CAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668 ||||||||||| ||||||| || || | ||||| || || | ||| | Sbjct 42931 TAATTTTATGTGTCTAATGGTCGTTTAAGTTGTATGATGTATTAGAGATCATGTGATTTT 42990 Query 35669 GGGTTGGGCGTGCCCTTCAATATTGC 35694 || ||||| || || |||||| |||| Sbjct 42991 GGATTGGGAGTACCTTTCAATGTTGC 43016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989574148382035