Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10 334 1e-86 seq56 277 2e-69 >seq10 Length=460275 Score = 334 bits (370), Expect = 1e-86 Identities = 634/935 (68%), Gaps = 40/935 (4%) Strand=Plus/Plus Query 33290 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33349 ||||| ||| ||||| || | | ||||||| || || |||||||||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 33350 TTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAAT 33409 ||||| | || || ||||| | |||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 33410 CAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAG 33469 | |||||| || || ||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 33470 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAAT 33529 || ||||| | || || ||| ||||| | |||||| | || ||| || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 33530 AAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA----ATGTTTAAACATCAAACATG 33585 | | || ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 33586 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGG 33645 | ||||| || | || || ||||| || ||||| || || || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 33646 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTC 33705 |||| || | |||||| | |||||| |||| | || || || || |||||||| | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 33706 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33765 |||| || ||||| || ||||| ||||| || || | | | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 33766 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATCGTTTCTATGGCATTAAAGA 33822 | ||||| |||||||||| ||||| |||| | || ||||||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 33823 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33882 || ||||||||||| ||| | | |||||||| ||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 33883 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 33942 |||| || ||||| ||||| || | |||||| ||||||||||| || || | ||| || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 33943 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAA 34002 |||||||||| ||| ||| |||||| || ||||| || |||||||||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 34003 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 34062 | |||||||||| ||| ||||| | ||||| |||| ||| ||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 34063 TAT------------------------CTTTAGATATATCCACTTCTTCCACTGTCCAAA 34098 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 34099 ATGATGCCTCTGCCTT-TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 34157 | |||| || || ||| |||||||||||||| |||| || | |||||||| | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 34158 ACAAATCTATTTGGATTTGGTGCAAGGATAGGTTC 34192 ||||| ||||||||||||||| | |||||||| Sbjct 101773 ACAAACCTATTTGGATTTGGTTTCAAAATAGGTTC 101807 >seq56 Length=254943 Score = 277 bits (306), Expect = 2e-69 Identities = 1140/1766 (65%), Gaps = 69/1766 (4%) Strand=Plus/Minus Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 || | |||| || |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 62274 TCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTACCATAATCCTATTCT 62328 | |||||| | ||| |||| | || || ||| || | || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 62329 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTA 62388 |||| || |||| | ||| || ||| | | || | ||| || |||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 62389 CTTG-GAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 | |||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || ||||||||| ||||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 62508 CTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGATGT-TCCCAATTCCAAAGA 62564 |||||| | || ||||| ||||| ||| || || | | ||||||| || | | Sbjct 217378 GAATTTCTCATTCC--ATGTT-TGATTATATTTTATTTCAAGGAATCCCAAT--CATACA 217324 Query 62565 TCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGT-TACTGGCGTACGATCC 62623 | || ||| ||| | ||| || || || | | || | || ||| Sbjct 217323 TT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT-TCC 217266 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA-ATGCAC 62682 | | |||| ||||| || || || | |||||| || | || | | | ||| | Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATC 217207 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | |||||||| || ||||| || | | ||||| |||| | || || | Sbjct 217206 CATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATTCGAAAG 217147 Query 62743 GATAATTTAAGAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 | || ||| | | || || || || ||||||| |||||| | || || |||||| Sbjct 217146 G-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTCTA 217088 Query 62802 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 ||| | ||||| | || |||| | | ||||||| |||||| |||||||| | | Sbjct 217087 TGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTAAA 217028 Query 62862 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62921 || ||||| | |||| ||| | ||| | ||| | ||||||||| | | Sbjct 217027 TTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTCTA 216968 Query 62922 TCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTA 62978 ||| ||| |||||| | | ||| | | || | ||| || || |||| ||||| | Sbjct 216967 TCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCATCA 216908 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 | | | |||||| || || ||||| || | |||||||| || || ||||||||||| Sbjct 216907 GGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAATTC 216848 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 | ||||||||| |||| ||||| ||||| || || | || | || |||||| Sbjct 216847 TTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTGAT 216788 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTC 63158 || | | ||||| || ||| ||| | ||| |||||| ||| || | | || | Sbjct 216787 ATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCT---TCCC 216731 Query 63159 CTTTCTCTTTCGT-ATA-GAGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 ||| | ||| | ||| || | ||| ||| | |||||| ||||| || || | Sbjct 216730 ATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTTAA 216671 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | |||||||||| || ||||| | | ||| ||| | || || || |||| || | Sbjct 216670 AGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTAC 216611 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTT 63335 ||||| | |||||||||||| | ||| ||||| ||||||||| || | ||| || || Sbjct 216610 ATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATT 216551 Query 63336 CCTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389 || |||||| || |||| ||| |||| || ||| |||||| |||||| Sbjct 216550 CCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTTCC 216497 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAG 63444 ||||||| ||| || | | || ||| | | ||||| | ||| | ||||| | Sbjct 216496 AAGTATACGGC---AAATGAA--CCTTTTCTCTTACCACCTCCTTAATCAACATATCTGG 216442 Query 63445 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGG 63504 | || | |||| | ||| | | ||| || | | || || ||||||||| || || Sbjct 216441 CAGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCAC 216382 Query 63505 AGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 63564 ||||| | | | | ||| ||| || | |||||||| || || || Sbjct 216381 GAATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATT 216322 Query 63565 TAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA 63624 || || | || |||| |||||| || ||||| || |||||||| |||||| | || Sbjct 216321 TACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCA 216262 Query 63625 TGTTAAGTAGAAAACAGCTAGACATTT-GGTGACGAGTAGTTCCCGCATTAAATAAGGTA 63683 | | | ||| ||||| |||||||| | || || || || ||| ||||| || Sbjct 216261 TATCCAATAGGAAACATGAAGACATTTATGGGAATGGT-GTGCCACTATTGAATAATGTT 216203 Query 63684 GGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63743 |||| ||| || ||||| |||||| || | | || || |||| | |||||| | Sbjct 216202 GGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGA 216143 Query 63744 ATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 | ||| | ||||||||| |||| || | ||||| | || || |||||||||| Sbjct 216142 AGATCATGCTTATGAATTCCAATACT--CACTCTCATTATTAATTGTTGGGGTCTTTCAA 216085 Query 63802 CAATTTTGTTGTTTA--TT--TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63857 || ||| ||| || || | ||||| | |||| || || || || |||||| Sbjct 216084 ----TTGGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAA 216029 Query 63858 TAGTTGTATGAAAAGTCTCGTTCGTA 63883 | | |||| || | || ||||| || Sbjct 216028 AAATCGTATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629811482896560