Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq56 399 2e-106 seq10 271 7e-68 >seq56 Length=254943 Score = 399 bits (442), Expect = 2e-106 Identities = 1107/1678 (66%), Gaps = 47/1678 (3%) Strand=Plus/Minus Query 36972 TAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 || ||| |||||| || ||||||||||| || || |||| ||||||||| ||||| Sbjct 217667 TAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATATTTTCTGG 217608 Query 37032 TAA---ATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCATT 37088 || ||| | || || || || ||||||| | | | | | |||| || || || Sbjct 217607 TATTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTTTGATAGCAGG 217548 Query 37089 ATTCCACATATTTCTACTT--ATTAGTTCTCTCAA-TAGGTGTGGATT--TACAACCTGA 37143 |||| | |||| | || ||||| || ||||| || || ||||| ||||| | Sbjct 217547 TGTCCAAAGATTT--AATTCAATTAGATC-CTCAACTAAATGGGGATTAATACAAACG-- 217493 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||| || |||||||| || || || || ||||||||||||| | ||| ||| Sbjct 217492 AATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAGGATTCA 217433 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||||| ||| |||| | || |||||||||||||| ||||| | ||| | |||| Sbjct 217432 TTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAATGAATTT 217373 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 |||| ||||||| | | || | | ||| | || |||||| ||| || || ||| Sbjct 217372 CTCATTCCATGTTTGATTATATTTTATTTCAAGGAATCCCAATC--ATACAT-TGATGGT 217316 Query 37324 TT--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 || | || |||||||||| ||| || || || | |||||| | | | ||| Sbjct 217315 TTGACATT--CCACATATCAAATTATAATATCCCCTATGATGCTGGACTTCCTTAAAATG 217258 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | |||||||| || | | ||||| ||| || | | || ||||||| | Sbjct 217257 TTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAACGTAAACATGATCCATAATAAA 217198 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 |||| || ||||||||| ||||||| ||| | || ||||| | || Sbjct 217197 TTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATTCGAAAGGTATTTTCA 217138 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | | || ||||||| || || | |||||| | || || ||||||||||| |||| Sbjct 217137 TTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTCTATGTTTTTTAT 217078 Query 37562 TAGATCTAGAC-GATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 | | | || | | || | |||| |||||| |||| | |||||| | | ||| ||||| Sbjct 217077 T-GCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTAAATTCAGATTA 217019 Query 37621 TTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACATAA--ATACGTTATT----- 37673 | | |||||| |||||| || | | | |||| || | | ||| | Sbjct 217018 GTTGTGATTATTTTAGTAATT----TCCAATAATTTAACAAAATCAAAAGTTCTATCTGG 216963 Query 37674 ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 ||| ||||| || ||| ||| ||| ||| |||||||| | ||||| Sbjct 216962 ATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCATCAGGAGA 216903 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTG 37793 || |||| ||||| || ||||| | |||||| | |||||||||| ||||| |||| Sbjct 216902 TGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAATTCTTTTG 216843 Query 37794 ATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTG 37853 ||| ||||| |||||| | |||||| |||| ||||| ||| ||| | ||||| Sbjct 216842 ATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTGATATTTA 216783 Query 37854 AGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAtttttttCTT 37913 || || || || || |||||| |||| || | || | || || || | | Sbjct 216782 TGCATCTATTATTTCTTGCCATAA------TGCTCTAGCCTTCATTGTACTTCTTCCCAT 216729 Query 37914 TGTTTCGTATTC-TAT-----ATATAATTTGTTAAAATCATTCCCCCATACA-TCGCATA 37966 | ||| ||||| ||| ||||||||| || || || ||| || ||| || | | Sbjct 216728 TTTTTTTTATTCATATGATTAATATAATTTATTGAACTC-TTCTCCATAACAATCTTAAA 216670 Query 37967 ATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCA 38026 ||||||||||| ||| ||||| |||| ||| ||| |||||| || || | || || Sbjct 216669 GCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTACA 216610 Query 38027 TAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCC 38086 ||||||||||||| | ||||||| | |||||||||| | || || |||||||| | | Sbjct 216609 TAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATTC 216550 Query 38087 CTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAA 38146 | |||||| | ||| |||||| |||| ||| ||||| ||||| | || | Sbjct 216549 CATGATTCTTACGTAATTAAAGAAAACTCCATATGTCACTATGCCAAGGTTCCAAGTATA 216490 Query 38147 TCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTAT 38206 | | || ||| ||| ||| ||||||| | || || |||||| | || | |||| Sbjct 216489 CGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCAGTATCATTAA 216430 Query 38207 ATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTAC 38266 ||| | ||| |||||| || | |||||| | | || ||| | || |||||| || Sbjct 216429 ATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGAATATAACTAT 216370 Query 38267 CCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAG 38326 | | | || || ||| ||| ||||||||||||||| || | ||| || | || Sbjct 216369 CTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTTACTAATAAGAG 216310 Query 38327 CGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAA 38386 | ||| |||||| || ||| | || |||||||| ||||| || | || | Sbjct 216309 CACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCATATCCAATAGGA 216250 Query 38387 AACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTA 38446 |||| |||||||| || ||||| || || || |||||||| |||| ||||| Sbjct 216249 AACATGAAGACATTTATGGGAATGGTGTGCCACTATTGAATAATGTTGGAGTAGCATGAG 216190 Query 38447 TGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGT 38506 | || |||||| |||| ||| ||| || | | | | | |||| | Sbjct 216189 TAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGAAGATCATGCTTAT 216130 Query 38507 GAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCT 38566 |||| || | | || ||||||| | ||||| |||||||| ||| ||| ||| | Sbjct 216129 GAATTCCAATACTCACTCTCATTATTAATTGTTGGGGTCTTTCAATTGGTTTCTTACCTT 216070 Query 38567 GTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATC 38624 ||||||| || | |||||||||| || | ||||||| || ||| ||||||| Sbjct 216069 CCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAAAAATCGTATTAATAATC 216012 >seq10 Length=460275 Score = 271 bits (300), Expect = 7e-68 Identities = 645/966 (67%), Gaps = 48/966 (5%) Strand=Plus/Plus Query 11285 AAATCTATATCCGTAGAAAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGA 11344 |||||| |||| ||| ||||| || || | ||| || | | || || | ||||| | Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACC-AGCTTTTTA 100886 Query 11345 -TATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATAT-ATACTCCA 11402 || |||| |||| || |||||| || || || || |||| || || || ||| |||| Sbjct 100887 GTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATA-TCCA 100945 Query 11403 TAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATC 11462 | | |||||||| | |||||||| | ||| | ||| | | | || || Sbjct 100946 TCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAATTAGTC 101005 Query 11463 TATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCA 11522 |||| || || ||||| || || || ||| | ||||||| || || | || | Sbjct 101006 TATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTA 101065 Query 11523 CCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGATT--AT 11577 | || | || | | | || |||||||| ||| ||| ||| ||| ||| || Sbjct 101066 CTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATTTCAT 101125 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAA 11637 || || | || || ||| || || | | ||| || | | |||||| ||||| Sbjct 101126 GGA--TTCT---TTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAA 101180 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 |||| |||||| ||||| ||||| ||| | |||||| || ||||||| ||| ||||| Sbjct 101181 ATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCAT 101240 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 | | || ||||| |||||||| || ||| ||| |||||||| ||||| || || || Sbjct 101241 AAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTC 101300 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCT 11817 ||||| || || || | || |||||| || || | || | |||||||| | Sbjct 101301 AACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATTTCAT 101360 Query 11818 GGCCCAATCAGCTTTCTTTT---TTAC--GCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||||| || ||||||| |||| ||| |||||| | || || | | ||| Sbjct 101361 TGCCCATGATGCCTTCTTTTGAATTACAGGCA---CATTGT--CAATGGCATGGAGTAAG 101415 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | ||||||| | | ||| | | || ||||| || || | | ||| |||| ||| Sbjct 101416 TAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAA 101475 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 || ||||||||||| || |||| ||||||||||||||||| || |||| | || || Sbjct 101476 TGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACT 101535 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | | ||| || ||||| |||||||| ||||| |||||||| | ||||| || Sbjct 101536 TCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAA 101595 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATC------- 12105 || | || || ||| ||||||| ||||| ||| ||||||| |||||||| Sbjct 101596 GCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAAGA 101655 Query 12106 -----------ATCTAAATCTT----TTGATAA--ATCTACTTCTTCAACGGTCCAAAAA 12148 | ||||| || || |||| ||| | ||| ||| | |||||||| Sbjct 101656 TCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAAAG 101715 Query 12149 CTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACG 12208 || ||| || ||| ||||| ||||||||||||| |||||||| ||||| | ||| Sbjct 101716 CTAGCCTTGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGAACA 101775 Query 12209 AACCTA 12214 |||||| Sbjct 101776 AACCTA 101781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468520249452880