Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10 316 3e-81 seq56 275 8e-69 >seq10 Length=460275 Score = 316 bits (350), Expect = 3e-81 Identities = 620/918 (68%), Gaps = 40/918 (4%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||| ||| ||||| || | | ||||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| | ||||| ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 | |||||| || |||||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || ||||| | || || ||| ||||| | |||||||| || || || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 36106 AGATATTACTGTTTCTTCACTCGG----TGGATACAATAAATGTTTAAACATCAAACATG 36161 | | | ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | ||||| |||| || || ||||| || ||||| ||||| || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 36281 |||| || | |||||| | |||||| |||| ||| || ||||| ||||| || | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 36282 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 36341 |||| || || || || ||||| ||||| || || | || | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 36342 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATTGTCTCTATAGCATTAAAGA 36398 | ||||| |||||||||| ||||| |||| | || || |||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 36399 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 || ||||||||||| ||| | | || ||||||||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||| || ||||| ||||| |||| |||||| ||||||||||| || || | ||| || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 36519 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 36578 |||||||||| ||| ||| |||||| || ||||| || ||||| |||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 36579 ACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGA 36638 | |||||||||| ||| ||||| | ||||| | || ||| ||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 36639 TAT------------------------CTTTAGATATATCCACTTCTTCCACTGTCCAAA 36674 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 36675 ATGATGCCTCTGCCTT-TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 | |||| || || ||| |||||||||||||| |||| || | |||||| || | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 36734 ACAAATCTATTTTGATTT 36751 ||||| |||||| ||||| Sbjct 101773 ACAAACCTATTTGGATTT 101790 >seq56 Length=254943 Score = 275 bits (304), Expect = 8e-69 Identities = 1141/1767 (65%), Gaps = 71/1767 (4%) Strand=Plus/Minus Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066 || | |||| || |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 65067 TCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 65121 | |||||| | ||| |||| | || || ||| || || || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 65122 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 65181 |||| || |||| | ||| || ||| | | || | ||| ||||||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 65182 CTTGA-AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 | ||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || ||||||||| ||||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 65301 CTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCAAAGA 65357 |||||| | || ||||| ||||| ||| || || ||| ||||||| || | | Sbjct 217378 GAATTTCTCATTCC--ATGTT-TGATTATATTTTATTTCAAGGAATCCCAAT--CATACA 217324 Query 65358 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT-TACTGGCGTACGATCC 65416 | || ||| || || || || || | | || | || ||| Sbjct 217323 TT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT-TCC 217266 Query 65417 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA-ATGCAC 65475 | | |||| || || || || || | |||||| |||| || | | | ||| | Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATC 217207 Query 65476 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAA 65533 | |||||||| || || || || | | ||||| |||| | ||| | | || Sbjct 217206 CATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATT--CGAA 217149 Query 65534 TGGATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 65592 || || ||| | | || || || || ||||||| |||||| | || || |||| Sbjct 217148 AGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 65593 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 65652 ||||| | ||||| | || |||| | | ||||||| |||||| |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 65653 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCT 65712 ||| ||||| | |||| ||| | ||| | ||| | ||||||||| | | Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAA-GTT 216971 Query 65713 C-ATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCA 65768 | |||| ||| |||||| | | ||| | | || | ||| || || |||| |||| Sbjct 216970 CTATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCA 216911 Query 65769 TTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 65828 | || | | |||||| || || ||||| || | |||||||| || || ||||||||| Sbjct 216910 TCAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAA 216851 Query 65829 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTT 65888 || | ||||||||| |||| ||||| ||||| || || | || | || |||||| Sbjct 216850 TTCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTT 216791 Query 65889 TCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTAT 65948 || | | ||||| || ||| ||| | ||| |||||| ||| || | | Sbjct 216790 GATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCTTCCC 216731 Query 65949 CTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 66008 | |||| | ||| ||| | ||| ||| | |||||| ||||| || || | Sbjct 216730 ATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTTAA 216671 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | || |||||||||| || ||||| | | ||| ||| | || || || |||| || | Sbjct 216670 AGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTAC 216611 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 ||||| | |||||||||||| | ||| |||||||||||| || || | ||| || || Sbjct 216610 ATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATT 216551 Query 66129 CCTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCC 66182 || |||||| || |||| ||| |||| || ||| |||||| |||||| Sbjct 216550 CCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTTCC 216497 Query 66183 AAGTATATGGCCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAG 66237 ||||||| ||| || | | || ||| | | ||||| | ||| | ||||| | Sbjct 216496 AAGTATACGGC---AAATGAA--CCTTTTCTCTTACCACCTCCTTAATCAACATATCTGG 216442 Query 66238 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 66297 | || | |||| | ||| | | ||| || | | ||||| | ||||||| || || Sbjct 216441 CAGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCAC 216382 Query 66298 AGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTT 66357 ||||| || | | | ||| ||| || | |||||||| || || || Sbjct 216381 GAATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATT 216322 Query 66358 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 66417 || || | || |||| |||||| || ||||| || || ||||| |||||| | || Sbjct 216321 TACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCA 216262 Query 66418 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAGGT 66475 | | | ||| ||||| |||||||| || || | || | || | ||| ||||| || Sbjct 216261 TATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGT 216204 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 66535 |||| ||| || ||||| |||||| || | | || || |||| | |||||| | Sbjct 216203 TGGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTG 216144 Query 66536 TATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 | ||| | ||||||||| |||| || | ||||| | || || ||||||||| Sbjct 216143 AAGATCATGCTTATGAATTCCAATACT--CACTCTCATTATTAATTGTTGGGGTCTTTCA 216086 Query 66594 ACGATCTTGTTGTTTA--TT--TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 | | ||| ||| || || | ||||| | |||| || || || || ||||| Sbjct 216085 A----TTGGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAA 216030 Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTA 66676 | | | |||| || | || ||||| || Sbjct 216029 AAAATCGTATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658166407496680