Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 8e-11 >seq2 Length=701642 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 ||| |||||||| | || || ||||||||||| || || || | ||| || ||| Sbjct 527664 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCGTC 527605 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | | ||| ||||| | || || | || | |||||| || || |||||||| || Sbjct 527604 TTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATC 527545 Query 139672 GGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 || |||| | ||| ||| || | |||||| | || || || |||| || | | Sbjct 527544 -TTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGG 527486 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || |||||||| |||| ||| Sbjct 527485 TTTTTCCTGTCAATGTCTTTACGAAAATTTACAT 527452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496059181978400