Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq56 351 1e-91 seq10 313 4e-80 >seq56 Length=254943 Score = 351 bits (388), Expect = 1e-91 Identities = 1149/1759 (65%), Gaps = 55/1759 (3%) Strand=Plus/Minus Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 || | |||| || |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 78946 TCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 79000 | |||||| | ||| |||| | || || ||| || || || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 79001 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 79060 |||| | |||| | ||| || ||| | | || | ||| ||||||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 79061 CTTGA-AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 | ||||| |||| ||| ||||| | |||||||| ||| | ||||||||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 |||||||||||| ||||||| | |||||||| || ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 79180 CTATTTCTAAGACC--GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGAT 79237 |||||| | || || |||| ||||||| || | || |||||||| | | || Sbjct 217378 GAATTTCTCATTCCATGTTTGATTATATTTTAT--TTCAAGGAATCCCAATC--ATACAT 217323 Query 79238 CAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGT----TACTAGCGTATGAT 79293 || || |||||||| | |||| ||| || || || | | || | | | Sbjct 217322 T-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT----T 217268 Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTA-ATGC 79352 ||| ||||||||||||| || || | | ||||||||| || | | | ||| Sbjct 217267 CCTTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGA 217209 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA--TCA 79410 ||| |||||||| || || ||||| | | ||| | |||| |||| | || Sbjct 217208 TCCATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGC--CTAGTCAGATTCG 217151 Query 79411 AATGGATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 79469 || || || ||| | | || || || || ||||||| |||||| | || || || Sbjct 217150 AAAGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGG 217092 Query 79470 TCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 79529 ||||||| | ||||| || |||| | | ||||||| |||||| |||||||| Sbjct 217091 TCTATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAAC 217032 Query 79530 TTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCG 79589 | ||| ||||| | |||| ||| | ||| || ||| | ||||||||| Sbjct 217031 TAAATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGT 216972 Query 79590 TCCATCT--ATT-ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 || |||| ||| |||||| | | ||| | | || | ||| || || |||| ||| Sbjct 216971 TCTATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTC 216912 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || || | | |||||| || |||||||| || | ||||||| ||||| |||||||| Sbjct 216911 ATCAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAA 216852 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 ||| | ||||||||| |||| ||||| ||||| || || | || | || ||||| Sbjct 216851 ATTCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGT 216792 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTA 79826 | || | | ||||| || ||| ||| | ||| |||||| ||| | |||| | Sbjct 216791 TGATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGT--ACTTCTT 216734 Query 79827 TC--TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCG 79884 | | |||| | ||| ||| | ||||||| | |||||| ||||| || ||| Sbjct 216733 CCCATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCT 216674 Query 79885 TCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGT 79944 | | || |||||||| | || ||||| | | ||| ||| |||| || || |||| | Sbjct 216673 TAAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTT 216614 Query 79945 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 | |||||| | |||||||||||| | ||| ||||| |||||| || || | || || Sbjct 216613 TACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCA 216554 Query 80005 TTTCCTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 |||| |||||| || |||| ||| |||| || ||| |||||| ||| Sbjct 216553 ATTCCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGT 216500 Query 80059 TCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 80118 |||||||||| ||| | || || || ||||| | ||| | ||||| || Sbjct 216499 TCCAAGTATACGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCA 216440 Query 80119 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 80178 || | |||| | ||| | | ||| || | | ||||| | ||||||| || || Sbjct 216439 GTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGA 216380 Query 80179 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTA 80238 ||||| || | | | ||| ||| || | |||||||| || || |||| Sbjct 216379 ATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTTA 216320 Query 80239 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATG 80298 || | || |||| |||||| || ||||| || || ||||| |||||| | ||| Sbjct 216319 CTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCATA 216260 Query 80299 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAGGTAG 80356 | | ||| ||||| |||||||| || || | || | || | ||| ||||| || | Sbjct 216259 TCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTTG 216202 Query 80357 GAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTA 80416 ||| ||| || ||||| |||||| |||| | || || |||| | |||||||| | Sbjct 216201 GAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGAA 216142 Query 80417 TATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 80476 ||| | ||||||||| | || | ||||| | || || |||||||||| Sbjct 216141 GATCATGCTTATGAATTCCAATACTCACTCTCATTATTAATTGTTGGGGTCTTTCAATTG 216082 Query 80477 TCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 80536 || ||| | || | |||||| | |||| || || || || |||||| | | || Sbjct 216081 GTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAAAAATCGT 216022 Query 80537 ATGAAAAGTCTCGTTCGTA 80555 || || | || ||||| || Sbjct 216021 ATTAATAATCACGTTCATA 216003 >seq10 Length=460275 Score = 313 bits (346), Expect = 4e-80 Identities = 621/921 (67%), Gaps = 40/921 (4%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||| ||| ||||| || | | ||||||| || || |||||||||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 49787 ||||| | || || ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 | |||||| || |||||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 || ||||| | || || ||| ||||| | |||||| | || ||| || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 49908 AGATCTAACGGTTTCTTCACTCGG----TGGATGCAATAAATGTTTAAACATCAAACATG 49963 | | || ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 49964 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 50023 | ||||| || | || || ||||| || | ||| ||||| || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 50024 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTC 50083 |||| || | |||||| | |||||| |||| ||| || ||||| |||||||| | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 50084 CTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACT 50143 |||| || || || || |||| ||||| || || | | | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 50144 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATCGTTTCTATGGCATTAAAGA 50200 | ||||| |||||||||| ||||| |||| | || ||||||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 50201 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 || ||||||||||| ||| | | |||||||| ||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 |||| || ||||| ||||| || | |||||| ||||||||||| || || | ||| || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 50321 CTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 |||||||||| ||| ||| ||||| || ||||| || ||||| |||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGA 50440 | |||||||||| ||| ||||| || ||||| | | ||| ||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 50441 TAT------------------------CTTTAGATATATCTACTTCTTCCACTGTCCAAA 50476 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 50477 ATGATGCCTCTGCCTT-TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 | |||| || || ||| |||||||||||||| |||| || | |||||||| | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 50536 ACAAATCTATTTGGATTTGGT 50556 ||||| ||||||||||||||| Sbjct 101773 ACAAACCTATTTGGATTTGGT 101793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718261823814280