Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq10 242 4e-59 >seq10 Length=460275 Score = 242 bits (268), Expect = 4e-59 Identities = 559/831 (67%), Gaps = 17/831 (2%) Strand=Plus/Plus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13586 ||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 13587 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13646 || |||| |||||| |||| |||||||| ||||| |||| || || || | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 13647 AAATCAAATGGATTTATTGACAT--AAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | || || ||||| || |||| ||| |||| || || || | || | || || Sbjct 100948 CACTCGAAAGGATTC-TTCACATTGAAAATCTTTGGAGCA-CCAAGAGCGAAAATTAGTC 101005 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 ||||||||| ||| ||||| ||||| ||| | ||||||| || |||| || || Sbjct 101006 TATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTA 101065 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATA--AT 13822 | || | | | | | ||||| ||||| |||| ||||| | ||||| || Sbjct 101066 CTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATTTCAT 101125 Query 13823 TGTAATAATCTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGCAAAA 13880 | || | | ||| || || |||| | ||| || | | |||||| |||||| Sbjct 101126 GG--ATTCTTTGATTGGAT--AGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAAA 101181 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||| ||| | || |||||||| || | ||| || || ||||||| ||||||||| Sbjct 101182 TCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCATA 101241 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | | || ||||| | |||||| || ||| ||| || || || ||||| || || ||| Sbjct 101242 AGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTCA 101301 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14060 || ||||| || || |||| || ||| |||| || | || | || |||||||| Sbjct 101302 ACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---ATCCATTTC 101358 Query 14061 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATAT 14120 | |||||| | || |||| ||| | | || | ||||| |||| | ||| || Sbjct 101359 ATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCATGGAGTAAGTAA 101418 Query 14121 TCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTG 14179 | || || || | | ||||| |||||||| ||| || ||| ||||||| || Sbjct 101419 TTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGA-ATATGTTTCAGAATG 101477 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||| |||||||| || || | ||| ||||| || ||||| ||||| | ||| ||||| Sbjct 101478 TATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTTC 101537 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | | ||| || || || || ||||| || || |||||||| || ||||| || || Sbjct 101538 TGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAGC 101597 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 ||||| | ||||||||||| | ||||| || | ||||| |||||| Sbjct 101598 CAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATC 101648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479723340641800