Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq10 260 1e-64 >seq10 Length=460275 Score = 260 bits (288), Expect = 1e-64 Identities = 564/832 (68%), Gaps = 19/832 (2%) Strand=Plus/Plus Query 13315 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13374 ||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 13375 TATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13434 || |||| |||||| |||| || ||||| ||||| |||| || || || | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 13435 AAATCGAATGGATTTGTTGACAT--AAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | ||||| ||||| || |||| ||| |||| || || || | || | || || Sbjct 100948 CACTCGAAAGGATTC-TTCACATTGAAAATCTTTGGAGCA-CCAAGAGCGAAAATTAGTC 101005 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 ||||||||| ||| ||||| ||||| ||| | ||||||| || |||| || || Sbjct 101006 TATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTA 101065 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || | | | | | | ||||| ||||| |||| ||||| | | | |||||| | Sbjct 101066 CTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCA--GATGA-AATAATTT 101122 Query 13613 TA---ATAATGTCATTAGAAGGAGGATATTTT--AGATGTTTAAAAATTAAACACGCAAA 13667 | || | | ||| || || |||| | ||| || | | |||||| ||||| Sbjct 101123 CATGGATTCTTTGATTGGAT--AGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAA 101180 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||| ||| | || |||||||| || | ||| || || ||||||| ||||||||| Sbjct 101181 ATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCAT 101240 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 | | || ||||| | |||||| || ||| || || || || ||||| || || || Sbjct 101241 AAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTC 101300 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 ||| ||||| || || ||||||| ||| |||| || | || | || |||||||| Sbjct 101301 AACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---ATCCATTT 101357 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 | |||||| | || |||| ||| | | || | || || |||| || ||| | Sbjct 101358 CATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCATGGAGTAAGTA 101417 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGT 13966 | || || || | | ||||| |||||||| ||| || ||| ||||||| | Sbjct 101418 ATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGA-ATATGTTTCAGAAT 101476 Query 13967 GTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14026 |||| ||||| || || || | ||| ||||| |||||||| ||||||| ||| || | Sbjct 101477 GTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTT 101536 Query 14027 CCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATG 14086 | | | ||| || ||| ||||| ||||| ||||| |||||||| || ||||| || | Sbjct 101537 CTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAG 101596 Query 14087 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 |||||| | ||||||||||| | ||||| || | ||||| |||||| Sbjct 101597 CCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATC 101648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478584151706280