Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10 309 4e-79 seq56 279 7e-70 >seq10 Length=460275 Score = 309 bits (342), Expect = 4e-79 Identities = 620/921 (67%), Gaps = 40/921 (4%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||| ||| ||||| || | | ||||||| || || || ||||||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| | || || ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | |||||| || | ||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 || ||||| | || || ||| ||||| | |||||||| || || || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 42013 AGATCTTACTGTTTCTTCACTCGG----TGGATACAATAAATGTTTAAACATCAAACATG 42068 | | | ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 42069 CGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 42128 | ||||| || | || |||||||| || ||||| ||||| || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 42129 GCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTC 42188 |||| || | |||||| | |||||| || | ||| || ||||| |||||||| | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 42189 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACT 42248 |||| || || || || ||||| ||||| || || | || | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 42249 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATCGTTTCTATGGCATTAAAGA 42305 | ||||| |||||||||| ||||| |||| | || ||||||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 42306 GATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 || ||||||||||| ||| | | || ||||| ||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||| || ||||| ||||| || | |||||| |||||||||||||| || | || || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 42426 CTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 |||||||||| ||| ||| ||||| || || || || ||||| |||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA 42545 | |||||||||| ||| ||||| | ||||| || | ||||||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 42546 TAT------------------------CTTTAGATATATCTACTTCTTCTACCGTCCAAA 42581 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 42582 A-TGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 | | ||| || | ||| ||||||||||||||||||| || | ||||||||| | | Sbjct 101714 AGCTAGCCTTGTG-TTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 42641 ACAAATCTATTTGGATTTGGT 42661 ||||| ||||||||||||||| Sbjct 101773 ACAAACCTATTTGGATTTGGT 101793 >seq56 Length=254943 Score = 279 bits (308), Expect = 7e-70 Identities = 1166/1820 (64%), Gaps = 51/1820 (3%) Strand=Plus/Minus Query 70846 ATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATA 70904 || |||||||||| ||| ||| | ||||| ||||| || | ||| || || Sbjct 217798 ATACCTGTTTTTAAACCTTTTTCCCAAGCATAAAAGTGCATTGAAGTGATTTTTGACATT 217739 Query 70905 GCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTC 70964 | | || ||||| || |||||||| | || | ||| | ||| ||||| | | ||||| Sbjct 217738 GTT-GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGA 217680 Query 70965 TGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTT 71024 | |||| | |||| || |||| || ||| ||||||| || || || | || Sbjct 217679 TACAGCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTT 217620 Query 71025 AATATCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCAATAATCCTA 71079 |||| |||||| | ||| |||| | || || ||| || || || | || Sbjct 217619 TATATTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTA 217562 Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 |||||||| | |||| | ||| || ||| | | || | ||| |||||| Sbjct 217561 TTTTTGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTA 217502 Query 71140 ACTACTTGA-AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 | ||| ||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| Sbjct 217501 A-TACAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTC 217443 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | || ||||||||| ||||||| | ||||||||||| ||||||||||||| | Sbjct 217442 GAAGGATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAG 217383 Query 71259 TAGACTATTTCTAAGACCATGT--GATCGGATTTTATCTTTTAGAGATTCCCAATTCCAA 71316 || |||||| | |||||| ||| ||||||| || | || ||||||| || Sbjct 217382 TAATGAATTTCTCATTCCATGTTTGATTATATTTTAT--TTCAAGGAATCCCAAT--CAT 217327 Query 71317 AGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGT----TACTAGCGTA 71372 | || |||||| || || || | | || | | Sbjct 217326 ACATT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT- 217269 Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTA- 71431 |||| | |||| || || || || ||| | | |||| |||| || | | | Sbjct 217268 ---TCCTTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAAC 217213 Query 71432 ATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTAT 71491 ||| |||||||||||| || || ||||| | | ||| | |||| | | Sbjct 217212 ATGATCCATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATT 217153 Query 71492 CAAATGGATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACGCCAATACCGATA 71550 | || || || ||| | | || || || || ||||||| ||| || | || || Sbjct 217152 CGAAAGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATT 217094 Query 71551 GGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 71610 ||||| ||| | ||||| || |||| | | ||||||| |||||| ||||||| Sbjct 217093 GGTCTATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATA 217034 Query 71611 ATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAAT 71670 | | ||| ||||| | |||| ||| | ||| || ||| | ||||||||| Sbjct 217033 ACTAAATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAA 216974 Query 71671 CTCCCATCT--ATT-ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 71727 | | |||| ||| |||||| | ||| | | || | ||| || || |||| | Sbjct 216973 GTTCTATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATC 216914 Query 71728 TCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCT 71787 |||| || | | |||||| ||||||||||| || | |||||||| || || |||||| Sbjct 216913 TCATCAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCT 216854 Query 71788 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCA 71847 ||||| | ||||||||| |||| ||||| ||||| || || | ||| | || ||| Sbjct 216853 AAATTCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCA 216794 Query 71848 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-TTCTT 71906 ||| || | | ||||| || ||| ||| | ||| |||||| ||| || ||||| Sbjct 216793 GTTGATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCTT 216734 Query 71907 GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATT 71966 | |||| | || | ||| | ||||||| | |||||| ||||| || || Sbjct 216733 CCCATTTTTTTTTATT-CATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATC 216675 Query 71967 GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCG 72026 | | || ||||||||||| || ||||| | | ||| ||| |||| || || |||| Sbjct 216674 TTAAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCT 216615 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 || |||||| | |||||||||||| | ||| ||||| |||||| || || | || || Sbjct 216614 TTACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTC 216555 Query 72087 GTTTCCTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 72140 |||| |||||| || |||| ||| |||| || ||| |||||| || Sbjct 216554 AATTCCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGG 216501 Query 72141 TTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 72200 ||||||||||| ||| | || | || ||||| | ||| | ||||| || Sbjct 216500 TTCCAAGTATACGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGC 216441 Query 72201 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGA 72260 || | |||| | ||| | | ||| || | | ||||| | |||||| || || Sbjct 216440 AGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACG 216381 Query 72261 GATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTT 72320 ||||| || | | | ||| || || | |||||||| || || ||| Sbjct 216380 AATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTT 216321 Query 72321 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 | || | || |||| |||||| || ||||| || || ||||| |||||| | ||| Sbjct 216320 ACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCAT 216261 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAGGTA 72438 | | ||| ||||| |||||||| || || | || | || | ||| ||||| || Sbjct 216260 ATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTT 216203 Query 72439 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 72498 |||| ||| || ||||| |||||| |||| | || || |||| | |||||||| Sbjct 216202 GGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGA 216143 Query 72499 ATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 | ||| | ||| ||||| | || | ||||| | || || |||||||||| Sbjct 216142 AGATCATGCTTATGAATTCCAATACTCACTCTCATTATTAATTGTTGGGGTCTTTCAATT 216083 Query 72559 ATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 72618 || ||| | || | ||||| | |||| || || || || |||||| | | | Sbjct 216082 GGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAAAAATCG 216023 Query 72619 TATGAAAAGTCTCGTTCGTA 72638 ||| || | || ||||| || Sbjct 216022 TATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671132681560520