Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 95.1 1e-14 >seq2 Length=701642 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| ||||| || | ||| ||||||||||| || ||||| || | ||| || ||| Sbjct 527664 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCGTC 527605 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || ||| ||||| | || || | || | |||||| || || |||||||| || Sbjct 527604 TTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATC 527545 Query 143092 GGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | |||| | ||| ||| || | ||||| | ||||| || |||| ||| | | Sbjct 527544 -TTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGG 527486 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| |||||||| |||| ||| Sbjct 527485 TTTTTCCTGTCAATGTCTTTACGAAAATTTACAT 527452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || ||||||| ||| ||||||||||| || ||||| || | ||| || || Sbjct 527892 CAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATC 527833 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || ||| || || |||| || | || | |||||| || || ||||||||||| Sbjct 527832 TTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTGTC 527773 Query 143092 GGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 || |||| | ||| | | || | ||||| | ||||| || |||| ||| | | Sbjct 527772 -TTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGG 527714 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || || |||||||| || ||||| |||| ||| Sbjct 527713 TTTTTCCTGTCAATGTCTTGACGAAGATTTACAT 527680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| ||||| || | ||| ||||||||||| || ||||| || | ||| || || Sbjct 528614 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATC 528555 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || ||| || || |||| || | || | |||||| || || |||||||| || Sbjct 528554 TTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATC 528495 Query 143092 GGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 | |||| | ||| ||| || | ||||| | ||||| || |||| ||| | | Sbjct 528494 -TTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGG 528436 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || || || ||||| |||||||| ||||||||| Sbjct 528435 TTTTTCCTGTTAATGTCTTTACGAAAATTTGCATA 528401 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| ||||| || | ||| ||||||||||| || ||||| || | ||| || || Sbjct 528841 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATC 528782 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 ||| | || ||| || || |||| || | || | |||||| || || ||||||||||| Sbjct 528781 TTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTGTC 528722 Query 143092 GGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCG 143150 || |||| | ||| | | || | ||||| | |||| || |||| ||| | | Sbjct 528721 -TTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTT-AACGTCAAGAGTGATGG 528664 Query 143151 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || |||||||| || ||||| |||| ||| Sbjct 528663 TCTTACCAGTCAATGTCTTGACGAAGATTTACAT 528630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507009475622640