Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq39 93.3 4e-14 >seq39 Length=303829 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| || || | || | ||| | || || ||||||| ||||||||||| | Sbjct 63077 CCTCCTCTTAATCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAA 63018 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || || ||||| || ||| |||||||||| | ||||| ||| Sbjct 63017 AGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGA 62958 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTG-GCCGACAGTATCGCCAGGCTCCGT 18993 | ||| || ||||| ||| || || |||| ||| ||| || || ||| || Sbjct 62957 ATGCCTTCCTTGTCCTAAATCTT-TGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGAC 62899 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || ||||||||||| ||||| |||||||||| ||| Sbjct 62898 ATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACAAAAATTTACAT 62851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414568874125138