Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 250 2e-61 >seq10 Length=460275 Score = 250 bits (276), Expect = 2e-61 Identities = 569/845 (67%), Gaps = 27/845 (3%) Strand=Plus/Plus Query 12806 AAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAGACATTTTTTGA 12865 ||||| ||| | || |||||| | ||| | || || ||| ||| ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 12866 TATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATA 12925 || || | |||||| |||| || ||||| |||||||||| | ||||| | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 12926 AAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACC--CTAATTCTAGTAACAATC 12983 | ||||||||||| ||| ||| | | | ||| | | | | | | | | || Sbjct 100948 CACTCGAAAGGATTCTTC--ACATTGAAAATCTTTGGAGCACCAAGAGCGAAAATTAGTC 101005 Query 12984 TGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTA 13043 | ||||||||||| || ||||| |||||||| | | |||||||| ||||||| || Sbjct 101006 TATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTA 101065 Query 13044 CAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGAT--AACTATGTC 13101 | || | ||||| | | || | ||||| ||| |||| || ||| || || || Sbjct 101066 CTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCA--GATGAAATAATTTC 101123 Query 13102 TCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATACATGCAA 13157 ||| | || | |||| ||| | | |||||| | | | ||| |||| Sbjct 101124 ATGGATT-CTTTG---ATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAA 101179 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 ||||| || |||||||||||||| ||| | || || || |||||||| || |||| Sbjct 101180 AATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCA 101239 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 |||| || ||||| |||||||| || ||| ||| ||||| || || || || |||| Sbjct 101240 TAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTT 101299 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 |||| || || || || || | |||||| || | | | ||| | | | ||||| | Sbjct 101300 CAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---ATCCATT 101356 Query 13338 TTCTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | | ||||| ||| || | || || ||| || ||| || || || | | ||| Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACAGG-CACATTGTCAATGGCATGGAGTAAG 101415 Query 13397 TAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAA 13456 ||||||||||| || || || |||||||| ||||| | ||| |||| ||| Sbjct 101416 TAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAA 101475 Query 13457 TGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACT 13516 || ||||||||||| || |||| || ||||| |||||||| || |||| | |||||| Sbjct 101476 TGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACT 101535 Query 13517 TCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaa 13576 || | | ||| || ||||||||| || || || || || ||||| |||||||| ||| Sbjct 101536 TCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAA 101595 Query 13577 GCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGAC---AACTTTAACCAATCTGGA 13633 || | || | |||||||| | ||||| ||||||| || ||| ||||||| | Sbjct 101596 GCCAATACATATTTAATAAAGTGCTTTTC---TTCTGACTTTAATTTTTCCCAATCTTTA 101652 Query 13634 AAATC 13638 | ||| Sbjct 101653 AGATC 101657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430978318731354