Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq5 188 9e-43 seq48 129 7e-25 >seq5 Length=531512 Score = 188 bits (208), Expect = 9e-43 Identities = 368/540 (68%), Gaps = 34/540 (6%) Strand=Plus/Plus Query 164400 TTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGAGC 164459 |||||| || | |||||||| || ||||| |||||| || |||||| ||| |||| Sbjct 503940 TTTTGATAAATTAGGAGTAGGAGGTTTAGATAAAGAATTAGCTAATATTTTTAGAAGAGC 503999 Query 164460 ATTTGCTTCTAGATCAGTTCCTATCGAAATAAT----aaaaaaaTTAGGCTGTAAACATA 164515 ||| |||| ||| | |||| || |||||| | |||||| || ||||||| Sbjct 504000 ATTCTCTTCAAGAAGATTTCC-AT---AATAATTTTTAGAAAAATATGGAATTAAACATG 504055 Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 |||| || || |||||| ||||||| |||||| ||||||||| | || || ||| Sbjct 504056 TAAAGGGTATGTTATTATATGGACCACCTGGTACAGGTAAAACACTTATAGCAAGATAAT 504115 Query 164576 TTGCTCAAGCTTTTAAATC---GCGACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 | ||| ||| || | | | | ||| |||||| |||||||| || ||| |||| | Sbjct 504116 TGGCTAAAGTATTAAGAGCTAAGGCACC---TAAAATCGTTAATGGACCAGAAATATTTA 504172 Query 164633 ACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAG 164692 |||| ||| || || | |||| ||||||||||| || ||| || ||| | || Sbjct 504173 GTAAATTTGTTGGAGAAGCTGAAGAAAATGTTAGAAAATTATTTGCTGAAGCTATTGCAG 504232 Query 164693 A--ACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAGA 164750 | | || |||| || | | ||| |||||||| |||| || |||||||| || || Sbjct 504233 ATTAAGAATCAAAGGGGGAT--GAAAGTGAATTACATATTATAGTATTTGATGAAATGGA 504290 Query 164751 TGCTCTTTGCAAAAAACGTGGTGATAATATTATTC--------------ATGATGCAGTG 164796 ||| |||| ||| || | ||| || || |||| ||||| || Sbjct 504291 TGCAATTTGTAAATAAAGAGGTTCTATTA--ATTCTGGAACAGGAGCATATGATAATGTT 504348 Query 164797 GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTA 164856 || ||| | ||| | || | || |||||||| | || |||||||||||| | || || Sbjct 504349 GTAAATTAATTGTTATCAATGATTGATGGTGTTAACTCTTTAAATAATATTCTTGTTATA 504408 Query 164857 GGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAA 164916 || ||||| || || |||||||||||||| || |||| ||||||| |||| ||| Sbjct 504409 GGAATGACAAATAGAAAAGATTTAATTGATGAAGCAGTATTGAGACCTGGAAGATTTGAA 504468 >seq48 Length=276533 Score = 129 bits (142), Expect = 7e-25 Identities = 287/417 (69%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 6841 TAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCA-ACAGCTTG 6899 || || |||| |||||| || ||| | ||| ||||| || | || | | |||| Sbjct 43106 TATATGTGAGTATCTCCAAGTACATGTACAAACTCACCAAGTCCAAGATTACATTCCTTG 43047 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 || | |||||| |||| ||| |||||| || ||||| |||||||| || ||||| | Sbjct 43046 -GCTAGTAAATAAGTTAGTAAAGCATAACTGGCAACATTGAAAGGTACTCCCAATCCAAA 42988 Query 6960 ATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAG-CATAAAATTGA 7017 ||| |||||| | ||| ||| |||| |||| | | || | ||||||||| | Sbjct 42987 ATCACATGATCTCTAATA-CATCATACAACTTAAACGACCAT-TAGACACATAAAATTAA 42930 Query 7018 CACAATACATGACATGGAGGTAAAACAGCCTGATCTATA--TCAGATGGATTCCAAGCAG 7075 ||||||||||||| |||||||| | | | |||| || || || ||||||||||| | Sbjct 42929 GACAATACATGACAAGGAGGTAATGC--CATAATCTTTAAATCTGAAGGATTCCAAGCTG 42872 Query 7076 TCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA--TAATTATTTGTAA 7133 | | || | |||| || ||||| |||||||| || || | || | ||| || Sbjct 42871 ATAAACAGATTCTTCTACTATCCGGATT-GTTTTTAAGTTAGTGAATTACATCTTTC-AA 42814 Query 7134 TTGATCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATG 7193 |||||| | || | | | |||| | || ||||| | || | || |||||||| Sbjct 42813 TTGATCGACTCCTTTATTTGTGTAATCTGCATTACAATCAGTGTATTATGCACCAAAATG 42754 Query 7194 TCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCC 7250 |||||||| ||| ||||| || || ||||||||| ||| | | || || ||||| Sbjct 42753 TCTCCATTAAAATCCATATATTGGTCCTAAATCATTTTCAGCTCTATTCTTTAATCC 42697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595866212593200