Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq2 104 2e-17 seq760 98.7 9e-16 seq753 86.0 6e-12 >seq6 Length=529034 Score = 113 bits (124), Expect = 4e-20 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 10860 AAAATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATA 10919 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | |||||| || || | | ||||| |||| || | ||||| Sbjct 10920 TTGTAGTCAG--AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTT 10977 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| | Sbjct 10978 ATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTAT 11037 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| ||||| ||||||||||| || || || ||||| || | || Sbjct 11038 CTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACA 11097 Query 95007 TGCTT 95011 || || Sbjct 11098 TGTTT 11102 Score = 113 bits (124), Expect = 4e-20 Identities = 173/245 (71%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 12297 AAAATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATA 12356 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | |||||| || || | | ||||| |||| || | ||||| Sbjct 12357 TTGTAGTCAG--AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTT 12414 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| | Sbjct 12415 ATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTAT 12474 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| ||||| ||||||||||| || || || ||||| || | || Sbjct 12475 CTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACA 12534 Query 95007 TGCTT 95011 || || Sbjct 12535 TGTTT 12539 Score = 109 bits (120), Expect = 5e-19 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 11842 AAAATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATA 11901 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | |||||| || || | | ||||| |||| || | ||||| Sbjct 11902 TTGTAGTCAG--AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTT 11959 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| | Sbjct 11960 ATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTAT 12019 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 | | | || || |||| ||||| ||||||||||| || || || ||||| || | || Sbjct 12020 CTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACA 12079 Query 95007 T 95007 | Sbjct 12080 T 12080 Score = 98.7 bits (108), Expect = 9e-16 Identities = 172/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 14622 AAAATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATA 14681 Query 94829 TTATAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGAT-TAATCTT 94885 || || | | | ||||| | || || | | ||||| |||| || | |||| Sbjct 14682 TTGTAGT--CAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATAGAGTCTT 14739 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 | ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| Sbjct 14740 TATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTA 14799 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || |||| ||||| | ||||||||| || || || ||||| || | | Sbjct 14800 TCTGATGGTTCAACATCAAGAGTGATTG-TTTTCCAGTGAGTGTCTTAACAAATATTTAC 14858 Query 95006 ATGCTT 95011 ||| || Sbjct 14859 ATGTTT 14864 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/242 (70%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 94769 AAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 12069 AAATATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAAT 12128 Query 94828 GTTATAATCGCTCATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || || | | | ||||| | || || | | ||||| |||| || | |||| Sbjct 12129 ATTGTAGT--CAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTT 12186 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 | ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| Sbjct 12187 TATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTA 12246 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || |||| ||||| | ||||||||| || || || || || || | | Sbjct 12247 TCTGATGGTTCAACATCAAGAGTGATTG-TTTTCCAGTGAGTGTCTTAACGAAAATTTAC 12305 Query 95006 AT 95007 || Sbjct 12306 AT 12307 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||||| | || ||||| | || ||||||||||| | || || || Sbjct 10643 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAG- 10701 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| || || | | ||||| |||| || | ||||| ||||| || Sbjct 10702 -AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 10760 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| ||||| |||||||| || ||||| || | | ||| || | | || Sbjct 10761 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 10820 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| ||||||||||| || || || || || || | ||| Sbjct 10821 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACAT 10870 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||||| | || ||||| | || ||||||||||| | || || || Sbjct 11625 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAG- 11683 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| || || | | ||||| |||| || | ||||| ||||| || Sbjct 11684 -AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 11742 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| ||||| |||||||| || ||||| || | | ||| || | | || Sbjct 11743 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 11802 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| ||||||||||| || || || || || || | ||| Sbjct 11803 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACAT 11852 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||||| | || ||||| | || ||||||||||| | || || || Sbjct 14405 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAG- 14463 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| || || | | ||||| |||| || | ||||| ||||| || Sbjct 14464 -AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 14522 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| ||||| |||||||| || ||||| || | | ||| || | | || Sbjct 14523 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 14582 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| ||||| ||||||||||| || || || || || || | ||| Sbjct 14583 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACAT 14632 >seq2 Length=701642 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| ||||| | || ||||||||| || | || ||||| ||||| | || || || | Sbjct 527907 TCCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTC--T 527850 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| ||| || | | ||||||| | ||||| | ||||| | ||| || Sbjct 527849 GAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 527790 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||||||||| || ||||| || ||||| || | | ||||| | | || Sbjct 527789 GGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCA 527730 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || |||| |||||||||||||| || | || || || ||||| | ||| Sbjct 527729 ACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACAT 527680 Score = 100 bits (110), Expect = 3e-16 Identities = 162/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| ||||| | || ||| || ||||| | || ||||| ||||| | || || || | Sbjct 528856 TCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTC--T 528799 Query 94840 CATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| ||| || | | ||||||| | ||||| | ||||| | ||| || Sbjct 528798 GAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 528739 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||||||||| || ||||| || ||||| || | | ||||| | |||| Sbjct 528738 GGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTG-ATGGTTA 528680 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| |||||||| || ||||| | || || || ||||| | ||| Sbjct 528679 ACGTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACGAAGATTTACAT 528630 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| ||||| | || ||| || ||||| | || ||||| ||||| | || | Sbjct 528636 TTTACATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGT 528577 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | | |||||| ||| || | | ||||||| | ||||| | ||||| | Sbjct 528576 AGTC--TGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTA 528519 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || || || |||||||| || | ||||| || ||||| || | | ||||| | Sbjct 528518 ATCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGA 528459 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || |||| |||||||||||||| || | || || || || || ||||| Sbjct 528458 TGGTTCAACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCAT 528402 Score = 82.4 bits (90), Expect = 7e-11 Identities = 164/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| ||| ||||| | || ||| || ||||| | || ||||| ||||| | || | Sbjct 527686 TTTACATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGT 527627 Query 94833 AATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | || | | |||||| || || | | |||||| | || || | ||||| | Sbjct 527626 AGTC--TGAGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTA 527569 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || || || |||||||| || | ||||| || ||||| || | | ||||| | Sbjct 527568 ATCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGA 527509 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | || || |||| |||||||||||||| || | || || || || || | |||| | Sbjct 527508 TGGTTCAACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTTACGAAAATTTACATGGT 527449 Query 95011 T 95011 | Sbjct 527448 T 527448 >seq760 Length=219 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| |||||| |||||||||||||| | || ||||| | || ||||||||||| | Sbjct 215 AAAATTTACATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATA 156 Query 94829 TTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || || | |||||| || || | | ||||| |||| || | ||||| Sbjct 155 TTGTAGTCAG--AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTT 98 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||| || || || ||||| ||||| |||||||| || ||||| || | | ||| | Sbjct 97 ATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTAT 38 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 | | | || || |||| ||||| ||||||||||| Sbjct 37 CTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGT 1 >seq753 Length=230 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| |||||||||| | || ||||| | || ||||||||||| | || || || Sbjct 14 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAG- 72 Query 94840 CATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGA 94897 | |||||| || || | | ||||| |||| || | ||||| ||||| || Sbjct 73 -AGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 131 Query 94898 GGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCG 94957 || || ||||| ||||| |||||||| || ||||| || | | ||| || | | || Sbjct 132 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 191 Query 94958 ACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC 94995 || |||| ||||| ||||||||||| || || || || Sbjct 192 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286845971720