Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10 293 2e-74 >seq10 Length=460275 Score = 293 bits (324), Expect = 2e-74 Identities = 649/967 (67%), Gaps = 43/967 (4%) Strand=Plus/Plus Query 21131 AAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGA 21190 ||||| ||||| | | || || ||||| | |||||| ||| | || ||||| Sbjct 100828 AAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACACCAGCTTTTTAG 100887 Query 21191 TAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATA 21250 ||||||| |||||| ||||||| || || || ||||||| | || || ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 21251 AAATCAAATGGATT-TTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCT 21309 | || || ||||| |||| ||| ||| || || | ||| || | | | || ||| Sbjct 100948 CACTCGAAAGGATTCTTCACATTGAAA-ATCTTTGGAGCACCAAGAGCGAAAATTAGTCT 101006 Query 21310 ATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTAC 21369 ||| || |||||||| || ||||| ||| | | ||||||| || || |||| ||| Sbjct 101007 ATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTAC 101066 Query 21370 AGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGC---TTCAACAATTATATT 21426 || | |||| | | || ||||| |||| || || | || |||| || Sbjct 101067 TGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATTTCATG 101126 Query 21427 TATTATCCTAGATGTACTAGGGGGAT-ACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 ||| | | ||| ||| | || ||| || || | | ||||| ||||||| Sbjct 101127 GATTCT--TTGATTGGATAGTTTATTGACCATA--TGCTTGTAGAGTAAACAAGCAAAAT 101182 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 || ||| || |||||||| || ||| |||||||| || ||||||| || ||||| | Sbjct 101183 CAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCATAA 101242 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 | ||||||||| | |||||| || | ||| | || || ||||| ||||| |||| Sbjct 101243 GTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTCAA 101302 Query 21606 CGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTT 21665 | ||||| || |||| || || |||| | ||| | || ||||| |||||||| Sbjct 101303 CAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAA---TCATTATCATTGATCCATTTCA 101359 Query 21666 CTGCCCATTTTGCCTTTTCTTTAAT-ACAATCA-ATTGTATCAATAGCTTTTAAAAGATG 21723 ||||||| |||||| | || ||| ||| || ||||| |||| || | | | | Sbjct 101360 TTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGT--CAATGGCATGGAGTAAGTA 101417 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 ||||||||||| | |||| || ||| | ||| |||||||||| Sbjct 101418 ATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAATG 101477 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTC 21843 ||||||||| || || || | |||||| || |||||||| || |||| | |||||| || Sbjct 101478 TATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTTC 101537 Query 21844 GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGC 21903 | | | ||| ||| || ||||| ||||| || |||||||||||||| ||||| || || Sbjct 101538 TGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAGC 101597 Query 21904 CAATATATTTTTTATAAAATATCGTTCGT-TATCTGTTAATTTTTTCCAATCT------- 21955 ||||| || ||| ||||| | ||| | | || ||||||||| ||||||| Sbjct 101598 CAATACATATTTAATAAAGTGCTTTTCTTCTGACT-TTAATTTTTCCCAATCTTTAAGAT 101656 Query 21956 -----AAT-------AAATCTT---TTGATAA--ATCTACTTCTTCAGTTGTCCAAAAGC 21998 ||| |||| || || |||| ||| | ||| |||| |||||||||| Sbjct 101657 CCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAAAGC 101716 Query 21999 TAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAA 22058 |||| | | ||| |||||| ||||||||||||| || | ||||| || | |||| Sbjct 101717 TAGCCTTGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGAACAA 101776 Query 22059 ACCTGTT 22065 |||| || Sbjct 101777 ACCTATT 101783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531895633913480