Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10 313 3e-80 seq56 269 3e-67 >seq10 Length=460275 Score = 313 bits (346), Expect = 3e-80 Identities = 621/921 (67%), Gaps = 40/921 (4%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||| ||| ||||| || | | ||||||| || || |||||||||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 33131 ||||| | || || ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 | |||||| || || ||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 || ||||| | || || ||| ||||| | |||||| | || ||| || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 33252 AGATCTAACGGTTTCTTCACTCGG----TGGATGCAATAAATGTTTAAACATCAAACATG 33307 | | || ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 33308 CGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGG 33367 | ||||| || | || || ||||| || | ||| ||||| || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 33368 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTC 33427 |||| || | |||||| | |||||| |||| | || || ||||| |||||||| | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 33428 CTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 33487 |||| || ||||| || ||||| ||||| || || | | | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 33488 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATCGTTTCTATGGCATTAAAGA 33544 | ||||| |||||||||| ||||| |||| | || ||||||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 33545 GATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 || ||||||||||| ||| | | |||||||| ||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 |||| || ||||| ||||| || | |||||| ||||||||||| || || | ||| || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 33665 CTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33724 |||||||||| ||| ||| || || || ||||| || ||||| |||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 33725 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33784 | |||||||||| ||| ||||| | ||||| |||| ||| ||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 33785 TAT------------------------CTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 33821 ATGATGCCTCTGCCTT-TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 | |||| || || ||| ||||| |||||||| |||| || | |||||||| | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 33880 ACAAATCTATTTGGATTTGGT 33900 ||||| ||||||||||||||| Sbjct 101773 ACAAACCTATTTGGATTTGGT 101793 >seq56 Length=254943 Score = 269 bits (298), Expect = 3e-67 Identities = 1140/1769 (64%), Gaps = 75/1769 (4%) Strand=Plus/Minus Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62222 || | |||| || |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 62223 TCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 62277 | |||||| | ||| |||| | || || ||| || || || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 62278 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337 |||| || |||| | ||| || ||| | | || | ||| ||||||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 62338 CTTGA-AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 | ||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || ||||||||| ||||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 62457 CTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCAAAGA 62513 |||||| | || ||||| ||||| ||| || || ||| ||||||| || | | Sbjct 217378 GAATTTCTCATTCC--ATGTT-TGATTATATTTTATTTCAAGGAATCCCAAT--CATACA 217324 Query 62514 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT-TACTGGCGTACGATCC 62572 | || ||| || || || || || | | || | || ||| Sbjct 217323 TT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT-TCC 217266 Query 62573 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA-ATGCAC 62631 | | |||| || || || || || | |||||| |||| || | | | ||| | Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATC 217207 Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAA 62689 | |||||||| || || || || | | ||||| |||| | ||| | | || Sbjct 217206 CATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATT--CGAA 217149 Query 62690 TGGATAATTTAAGAGAATA-AACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62748 || || ||| | | || || || || ||||||| |||||| | || || |||| Sbjct 217148 AGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 62749 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62808 ||||| | ||||| | || |||| | | ||||||| |||||| |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 62809 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC 62868 ||| ||||| | |||| ||| | ||| | ||| | ||||||||| | Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTC 216970 Query 62869 CATCT--ATT-ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62925 |||| ||| |||||| | | ||| | | || | ||| || || |||| ||||| Sbjct 216969 TATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCAT 216910 Query 62926 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAAT 62985 || | | |||||| || || ||||| || | |||||||| || || |||||||||| Sbjct 216909 CAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAAT 216850 Query 62986 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 63045 | | ||||||||| |||| ||||| ||||| || || | || | || |||||| Sbjct 216849 TCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTG 216790 Query 63046 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 63105 || | | ||||| || ||| ||| | ||| |||||| ||| || | | || Sbjct 216789 ATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCT---TC 216733 Query 63106 TCCTTTCTCT---TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 | ||| | | ||| ||| | ||| ||| | |||||| ||||| || || | Sbjct 216732 CCATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTT 216673 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 | || |||||||||| || ||||| | | ||| ||| | || || || |||| || Sbjct 216672 AAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTT 216613 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63282 |||||| | |||||||||||| | ||| ||||| |||||| || || | ||| || Sbjct 216612 ACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAA 216553 Query 63283 TTCCTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 63336 |||| |||||| || |||| ||| |||| || ||| |||||| |||| Sbjct 216552 TTCCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTT 216499 Query 63337 CCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCT 63391 ||||||||| ||| || | | || ||| | | ||||| | ||| | ||||| Sbjct 216498 CCAAGTATACGGC---AAATGAA--CCTTTTCTCTTACCACCTCCTTAATCAACATATCT 216444 Query 63392 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACC 63451 || || | |||| | ||| | | ||| || | | || || ||||||||| || || Sbjct 216443 GGCAGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCC 216384 Query 63452 GGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCAT 63511 ||||| || | | | ||| ||| || | |||||||| || || Sbjct 216383 ACGAATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTA 216324 Query 63512 TTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGAT 63571 |||| || | || |||| |||||| || ||||| || || ||||| |||||| | Sbjct 216323 TTTACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTAC 216264 Query 63572 CATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAG 63629 ||| | | ||| ||||| |||||||| || || | || | || | ||| ||||| Sbjct 216263 CATATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAAT 216206 Query 63630 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 63689 || |||| ||| || ||||| |||||| || | | || || |||| | |||||| Sbjct 216205 GTTGGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGAT 216146 Query 63690 TCTATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 | | ||| | ||||||||| |||| || | ||||| | || || ||||||| Sbjct 216145 TGAAGATCATGCTTATGAATTCCAATACT--CACTCTCATTATTAATTGTTGGGGTCTTT 216088 Query 63748 CAACGATCTTGTTGTTTA--TT--TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 63803 ||| | ||| ||| || || | ||||| | |||| || || || || ||| Sbjct 216087 CAA----TTGGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCA 216032 Query 63804 AAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 ||| | | |||| || | || ||||| || Sbjct 216031 AAAAAATCGTATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622941149625320