Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 131 2e-25 seq6 104 2e-17 seq39 98.7 1e-15 seq760 91.5 1e-13 seq753 89.7 5e-13 >seq2 Length=701642 Score = 131 bits (144), Expect = 2e-25 Identities = 172/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 26762 AAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 ||| ||| |||||| | || ||||| |||||||| |||||| | ||||| | || | | Sbjct 528394 AAATAAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTG 528453 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 || || ||||| || || ||||||| || || || |||||||| || || | Sbjct 528454 AACCATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCAC 528513 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 ||||| || ||||||| || | || ||| ||| || | ||||||| |||| || | Sbjct 528514 CCGATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAG 528573 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || |||||||||||||| || |||| | || ||||||||||||| |||| Sbjct 528574 ACTACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAA 528630 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||||| || |||||| | ||||| | || | ||| || Sbjct 527679 AATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATC 527738 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || |||||| || || ||||||||||| || || |||||| | Sbjct 527739 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 527798 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | ||||||| || | || ||| ||| || | ||||||| |||| || ||||| || Sbjct 527799 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 527858 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||||||||| || | ||| |||| ||||||||||||| ||||| Sbjct 527859 TATTCAAAAAGAATCCACACTTCATTTGGTGTTGAGACTTAGAGGTGGAAA 527909 Score = 118 bits (130), Expect = 1e-21 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 26763 AACAAA--ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAG 26820 |||||| ||| || | || ||||| ||||| || |||||| | ||||| | || | | Sbjct 527444 AACAAACCATGTAAATTTTCGTAAAGACATTGACAGGAAAAACCATCACTCTTGATGTTG 527503 Query 26821 AATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTC 26880 || || ||||| || || ||||||| || || || |||||||| || || | Sbjct 527504 AACCATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCAC 527563 Query 26881 CCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG 26940 ||||| || ||||||| |||| || || ||| || | ||||| | |||| || | Sbjct 527564 CCGATTAATAAAGACTTATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACACTCTCAG 527623 Query 26941 ACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||| || |||||||||||||| || |||| | || ||||||||||||| |||| Sbjct 527624 ACTACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAA 527680 Score = 107 bits (118), Expect = 2e-18 Identities = 163/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||||| ||||| || | ||||| | || | || || Sbjct 528629 AATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGACGTT-AACCATC 528687 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||| || || |||||| || || ||||||||||| || || |||||| | Sbjct 528688 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 528747 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | ||||||| || | || ||| ||| || | ||||||| |||| || ||||| || Sbjct 528748 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 528807 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAA 26998 |||||||||||||| || |||| | || ||||||||||||| ||||| Sbjct 528808 TATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAAA 528858 >seq6 Length=529034 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||| || | ||||| || ||| | ||||||||| | ||||| | || | ||| || Sbjct 11101 AACATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCA 11042 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || || || ||||||| || ||| ||||| ||||| || || |||||| Sbjct 11041 TCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGAT 10982 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||| |||||||||||| | || || || | ||||| | |||| || ||||| Sbjct 10981 CAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTAC 10922 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || |||||||| ||||| || | || | || || ||| | |||||||||| Sbjct 10921 AATATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGGAA 10870 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | ||||| || ||| | ||||||||| | ||||| | || | ||| || Sbjct 12081 AATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 12022 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || ||||||| || ||| ||||| ||||| || || |||||||| Sbjct 12021 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 11962 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | |||||||||||| | || || || | ||||| | |||| || ||||| || Sbjct 11961 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 11902 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| ||||| || | || | || || ||| | |||||||||| Sbjct 11901 TATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGGAA 11852 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||| || | ||||| || ||| | ||||||||| | ||||| | || | ||| || Sbjct 12538 AACATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCA 12479 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || || || ||||||| || ||| ||||| ||||| || || |||||| Sbjct 12478 TCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGAT 12419 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||| |||||||||||| | || || || | ||||| | |||| || ||||| Sbjct 12418 CAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTAC 12359 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || |||||||| ||||| || | || | || || ||| | |||||||||| Sbjct 12358 AATATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGGAA 12307 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||| | ||||||||| | ||||| | || | ||| || Sbjct 12308 AATGTAAATTTTCGTTAAGACACTCACTGGAAAA-CAATCACTCTTGATGTTGAACCATC 12250 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || ||||||| || ||| ||||| ||||| || || |||||||| Sbjct 12249 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 12190 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | |||||||||||| | || || || | ||||| | |||| || ||||| || Sbjct 12189 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 12130 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA---AAATAT 27003 |||||||| ||||| || | || | || || ||| | |||||||||| |||||| Sbjct 12129 TATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGGAATGTAAATAT 12071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||| | ||||||||| | ||||| | || | ||| || Sbjct 10871 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 10812 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || ||||||| || ||| ||||| ||||| || || |||||||| Sbjct 10811 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 10752 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | |||||||||||| | || || || | ||||| | |||| || ||||| || Sbjct 10751 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 10692 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 |||||||| ||||| || | || | || || ||| | ||||| ||| || ||||| Sbjct 10691 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGATAATATTGATT 10632 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||| | ||||||||| | ||||| | || | ||| || Sbjct 11853 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 11794 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || ||||||| || ||| ||||| ||||| || || |||||||| Sbjct 11793 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 11734 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | |||||||||||| | || || || | ||||| | |||| || ||||| || Sbjct 11733 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 11674 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 |||||||| ||||| || | || | || || ||| | ||||| ||| || ||||| Sbjct 11673 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGATAATATTGATT 11614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || || ||| | ||||||||| | ||||| | || | ||| || Sbjct 14633 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 14574 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || ||||||| || ||| ||||| ||||| || || |||||||| Sbjct 14573 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 14514 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | |||||||||||| | || || || | ||||| | |||| || ||||| || Sbjct 14513 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 14454 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 |||||||| ||||| || | || | || || ||| | ||||| ||| || ||||| Sbjct 14453 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGATAATATTGATT 14394 >seq39 Length=303829 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||| || | ||||| ||||| ||||| || || | ||||| | || | ||| | Sbjct 62851 ATGTAAATTTTTGTTAAAACCTTAACAGGTAAGACAATCACACTTGATGTCGAACCTTCT 62910 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| ||| ||| ||||||| ||||| ||||| || || ||||||||| Sbjct 62911 GACACCATCGATGCAGTTAAAGCAAAGATTTAGGACAAGGAAGGCATTCCCCCCGATCAA 62970 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||| |||| | || |||||||| ||||| | |||| | || || || Sbjct 62971 TAAAGACTTATTTTTGCAGGAAAACAACTTGAAGACGGAAGAACTCTTTCAGATTACAAT 63030 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||| ||||| || | || | || || ||| | |||||||| Sbjct 63031 ATCTAAAAGGAATCAACCCTTCACTTAGTACTTAGATTAAGAGGAGG 63077 >seq760 Length=219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||||||| | ||||| | || | ||| || || || || || ||||||| Sbjct 1 ACTGGAAAAACAATCACTCTTGATGTTGAACCATCAGATACTATTGATGCAGTCAAAGCT 60 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 || ||| ||||| ||||| || || ||||||||| |||||||||||| | || || Sbjct 61 AAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCATTTTTGCTGGAAAG 120 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 || | ||||| | |||| || ||||| || |||||||| ||||| || | || Sbjct 121 TAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAATCAACACTTCAC 180 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 | || || ||| | |||||||||| Sbjct 181 TTAGTTCTAAGATTGAGAGGAGGAA 205 >seq753 Length=230 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26781 GTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAG 26840 || || ||| | ||||||||| | ||||| | || | ||| || || || || || Sbjct 229 GTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCAGATACTATTGAT 170 Query 26841 CAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATT 26900 ||||||| || ||| ||||| ||||| || || ||||||||| ||||||||||| Sbjct 169 GCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCATT 110 Query 26901 TACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAA 26960 | | || || || | ||||| | |||| || ||||| || |||||||| ||| Sbjct 109 TTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAA 50 Query 26961 TCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAATATGATT 27007 || || | || | || || ||| | ||||| ||| || ||||| Sbjct 49 TCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGATAATATTGATT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478657750991440