Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq10 284 3e-71 >seq10 Length=460275 Score = 284 bits (314), Expect = 3e-71 Identities = 549/797 (69%), Gaps = 31/797 (4%) Strand=Plus/Minus Query 22168 GATTGGCCAAAACTTACAGAAA-ACGAACAACATTTTATCAAATATATTCTAGCATTCTT 22226 |||||| |||| ||| || | | ||| | || ||||| |||||| | | || ||||| Sbjct 101648 GATTGGGAAAAA-TTAAAGTCAGAAGAAAAGCACTTTATTAAATATGTATTGGCTTTCTT 101590 Query 22227 TGCTACCGCAGACGGTATAGTTTTTGAGAATCTAG--TGACTAATTTTGCATCTGAAATT 22284 |||| || || || || || |||||| ||| | || |||| || | | ||| || Sbjct 101589 TGCTGCCAGTGATGGAATTGTCAATGAGAACTTAGCATAAC-AATTCTGTA-CAGAAGTT 101532 Query 22285 CAATACCCAGAGGCCAGATGTTTCTATGGTGTGCAAATGATGATTGAAAATGTTCACGCG 22344 ||| ||||| ||||||||||||||||| | |||| || |||||| | || | Sbjct 101531 CAAATTCCAGAAGCCAGATGTTTCTATGGATTTTAAATTGCCATGGAAAATATACATTCT 101472 Query 22345 GAAACATATTCTAT-------GATGCT-ACAGTCACTCGTAGAAGATAAAGACGAACAAC 22396 |||||||||||| | ||| || ||| ||||| ||| || | ||| || Sbjct 101471 GAAACATATTCTCTCTTGATTGATACTTACA-TCACT-------GATGAAAATGAAAAAA 101420 Query 22397 GAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAAGAATAAGGCAGATTGGGCGC 22456 ||||| ||| || ||| || | | |||| | || |||||| ||||| Sbjct 101419 ATTACTTACTCCATGCCATTGACAATGTGCCTGTAATTCAAAAGAAGGCATCATGGGCAA 101360 Query 22457 TGAAATGGATGAACAATGAACGTTCATTCGCGGAACGTCTTATTGCATTTGCTGTGGTTG 22516 |||||||||| || || | |||||| || ||| | || ||||| || |||| |||| Sbjct 101359 TGAAATGGATCAATGATAATGATTCATTTGCTGAAAGACTAATTGCTTTCGCTGCTGTTG 101300 Query 22517 AAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTA 22576 ||||||| ||||| ||||| | |||||||| || |||||| | ||||| | || ||| Sbjct 101299 AAGGCATCTTCTTCTCTGGTTCTTTTTGTGCCATTTTTTGGATCAAAAAGAGATCACTTA 101240 Query 22577 TGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATACCGATT 22636 |||| || ||||| || || ||||| || || ||||||| || | ||||| |||| Sbjct 101239 TGCCAGGACTAACATTCTCCAATGAATTGATATCAAGAGATGAAGGATTACATACTGATT 101180 Query 22637 TTGCGTGTATGCTATATCGGAATCATATCATTCATAAACT-TCCATATGAAACTGTACTT 22695 |||| ||| | || || || ||||| | ||||||| |||| || ||| | | | Sbjct 101179 TTGCTTGTTTACTCTA---CAAGCATATGGTCAATAAACTATCCA-ATCAAAGAATCCAT 101124 Query 22696 GATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTATTTGCGAGGCGTTACCAGTA 22755 || |||||| || ||| |||| ||||| ||| ||| | || || ||||||||| Sbjct 101123 GAAATTATTTCATCTGCTGTTGCTATTGAAAAGGAATTCATTAGTGAAGCATTACCAGTA 101064 Query 22756 AGTCTCATTGGTATCAATGCCGAATCAATGAGTACATATATTAAATTTGTTGCAGATCGT 22815 | ||||| || ||| | | |||| ||| ||| |||||||||| ||| | Sbjct 101063 GAATTAATTGGAATGAATTCAACACTCATGAAACAATACATTGAATTTGTTGCTGATAGA 101004 Query 22816 CTATTAATTTCACTC--GGTTATGCAAAGCATTATAACGTCGTTAATCCATTTGAATGGA 22873 ||| | |||| ||| ||| | ||||| || || || ||||| || || |||| Sbjct 101003 CTA--ATTTTCGCTCTTGGTGCTCCAAAGATTTTCAATGTGAAGAATCCTTTCGAGTGGA 100946 Query 22874 TGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAAAGAGTTGGTGAATACC 22933 |||| | ||||| || ||||||| ||||| |||||||||| |||||| ||||| ||| Sbjct 100945 TGGATATGATTTCCCTCTAAGGAAAAACCAACTTCTTCGAAAGAAGAGTAGGTGATTACT 100886 Query 22934 AAAAAGCAGGTGTTATG 22950 ||||||| ||||| ||| Sbjct 100885 AAAAAGCTGGTGTCATG 100869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303340624707614