Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=701642 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||| |||| || ||||| || | || ||||||||||| || | || || ||| Sbjct 527679 AATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAA-CCAT 527737 Query 115345 C-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| || ||| ||||| || |||||||| |||| ||| Sbjct 527738 CAGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATT 527797 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | |||||||||| | || || ||| |||||||||||| | ||| | | || || | Sbjct 527798 AATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACA 527857 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAA 115515 | ||||||||||| || || | ||| ||||||||||| | |||| ||||| Sbjct 527858 ATATTCAAAAAGAATCCACACTTCATTTGGTGTTGAGACTTAGAGGTGGAAA 527909 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 115281 TAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGT 115340 |||| ||||||||||| || || || | || ||||||||||| || | || || Sbjct 528397 TAAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTGAA- 528455 Query 115341 CCAGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 ||| | ||||| ||| ||| ||| ||||| ||||||||||| |||| Sbjct 528456 CCATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCC 528515 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||| | |||||||||| | || || ||| |||||||||||| | ||| | | || Sbjct 528516 GATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGAC 528575 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 || || ||||||||||| || || | || | || |||||| | |||| |||| Sbjct 528576 TACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAA 528630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425339972125240