Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10 316 3e-81 seq56 286 4e-72 >seq10 Length=460275 Score = 316 bits (350), Expect = 3e-81 Identities = 620/918 (68%), Gaps = 40/918 (4%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||||| ||| ||||| || | | ||||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 32488 ||||| | ||||| ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 | |||||| || |||||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 || ||||| | || || ||| ||||| | |||||||| || || || ||||| Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 32609 AGATCTTACTGTTTCTTCACTCGG----TGGATACAATAAATGTTTAAACATCAAACATG 32664 | | | ||||| | || | || | | ||| || | | ||||| | Sbjct 101121 T----TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAG 101176 Query 32665 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 32724 | ||||| |||| || || ||||| || ||||| ||||| || || ||||| | Sbjct 101177 CAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTG 101236 Query 32725 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 32784 |||| || | |||||| | |||||| |||| ||| || ||||| ||||| || | Sbjct 101237 GCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGC 101296 Query 32785 CTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACT 32844 |||| || || || || ||||| ||||| || || | | | |||| ||||| | Sbjct 101297 CTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATT 101356 Query 32845 TTTGAGCCCAATCGGCCTTCTTTT---TTACACAAGGCATTGTCTCTATAGCATTAAAGA 32901 | ||||| |||||||||| ||||| |||| | || || |||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 32902 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 || ||||||||||| ||| | | || ||||||||||| ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 |||| || ||||| ||||| |||| |||||| ||||| ||||| || || | ||| || | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 33022 CTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 33081 |||||||||| ||| ||| |||||| || ||||| || ||||| |||||||| ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 33082 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 33141 | |||||||||| ||| ||||| | ||||| |||| ||| ||| | |||||| || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 33142 TAT------------------------CTTTAGATATATCCACTTCTTCCACTGTCCAAA 33177 || ||| | | | ||| | ||| || | ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 33178 ATGATGCCTCTGCCTT-TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 33236 | |||| || || ||| |||||||||||||| |||| || | |||||| || | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 33237 ACAAATCTATTTGGATTT 33254 ||||| |||||||||||| Sbjct 101773 ACAAACCTATTTGGATTT 101790 >seq56 Length=254943 Score = 286 bits (316), Expect = 4e-72 Identities = 1141/1766 (65%), Gaps = 69/1766 (4%) Strand=Plus/Minus Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || || || ||||| ||||| | |||| ||| | ||| ||||| | | ||||| | || Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 || | |||| ||| |||| || ||| ||||||| || || || | || ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 62078 TCTTCTGGAAGGTTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCT 62132 | |||||| | ||| |||| | || || ||| || || || | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 62133 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62192 |||| || |||| | ||| || ||| | | || | ||| ||||||| || Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAA-TA 217499 Query 62193 CTTGA-AATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 | ||||| |||| ||| ||||| | |||||||| ||| | ||||| ||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || ||||||||| ||||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTT--TTAGAGGT-TCCCAATTCCAAAGA 62368 |||||| | || ||||| ||||| ||| || || ||| ||||||| || | | Sbjct 217378 GAATTTCTCATTCC--ATGTT-TGATTATATTTTATTTCAAGGAATCCCAAT--CATACA 217324 Query 62369 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGT-TACTGGCGTACGATCC 62427 | || ||| || || || || || | | || | || ||| Sbjct 217323 TT-GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT-TCC 217266 Query 62428 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTA-ATGCAC 62486 | | |||| || || || || || | |||||| |||| || | | | ||| | Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATC 217207 Query 62487 CGTAATAAATGGTTTCGAAGATCTTCTTATTTA--GATCTTGCGCTTCCAGGCTATCAAA 62544 | |||||||| || || || || | | ||||| || ||| ||| | | || Sbjct 217206 CATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATT--CGAA 217149 Query 62545 TGGATAATTTAAGAGAATA-AACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTC 62603 || || ||| | | || || || || ||||||| |||||| | || || |||| Sbjct 217148 AGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 62604 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62663 ||||| | ||||| | || |||| | | ||||||| |||||| |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 62664 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC 62723 ||| ||||| | |||| ||| | ||| | ||| | ||||||||| | Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTC 216970 Query 62724 CATCT--ATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 |||| ||| |||||| | | ||| | | || | ||| || || |||| ||||| Sbjct 216969 TATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCAT 216910 Query 62781 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 62840 || | | |||||| || || ||||| || | |||||||| || || |||||||||| Sbjct 216909 CAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAAT 216850 Query 62841 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTT 62900 | | ||||||||| |||| ||||| ||||| || || | || | || |||||| Sbjct 216849 TCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTG 216790 Query 62901 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATC 62960 || | | ||||| || ||| ||| | ||| |||||| ||| || | | Sbjct 216789 ATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCTTCCCA 216730 Query 62961 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63020 | |||| | ||| ||| | ||| ||| | |||||| ||||| || || | | Sbjct 216729 TTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTTAAA 216670 Query 63021 GTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63080 | || |||||||||| || ||||| | | ||| ||| | || || || |||| || || Sbjct 216669 GCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTACA 216610 Query 63081 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63140 |||| | |||||||||||| | ||| ||||| |||||| || || | ||| || ||| Sbjct 216609 TAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATTC 216550 Query 63141 CTGTATTCTT------TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 63194 | |||||| || |||| ||| |||| || ||| |||||| ||||||| Sbjct 216549 CATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTTCCA 216496 Query 63195 AGTATATGGCCATAACTCCAGGCCGTTTGTTT-----CCTCCCTGATCTATGTATCTAGC 63249 |||||| ||| || | | || ||| | | ||||| | ||| | ||||| || Sbjct 216495 AGTATACGGC---AAATGAA--CCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGC 216441 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 || | |||| | ||| | | ||| || | | ||||| | ||||||| || || Sbjct 216440 AGTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACG 216381 Query 63310 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 ||||| || | | | ||| ||| || | |||||||| || || ||| Sbjct 216380 AATATAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTT 216321 Query 63370 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 63429 | || | || |||| |||||| || ||||| || || ||||| |||||| | ||| Sbjct 216320 ACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCAT 216261 Query 63430 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT-TCCCGC-ATTAAATAAGGTA 63487 | | ||| ||||| |||||||| || || | || | || | ||| ||||| || Sbjct 216260 ATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTT 216203 Query 63488 GGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547 |||| ||| |||||||| |||||| || | | || || |||| | |||||| | Sbjct 216202 GGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGA 216143 Query 63548 ATATCCCATTGATGAATTCC--TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605 | ||| | ||||||||| |||| || | ||||| | || || |||||||||| Sbjct 216142 AGATCATGCTTATGAATTCCAATACT--CACTCTCATTATTAATTGTTGGGGTCTTTCAA 216085 Query 63606 CGATCTTGTTGTTTA--TT--TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAA 63661 | ||| ||| || || | ||||| | |||| || || || || |||||| Sbjct 216084 ----TTGGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAA 216029 Query 63662 TAGTTGTATGAAAAGTCTCGTTCGTA 63687 | | |||| || | || ||||| || Sbjct 216028 AAATCGTATTAATAATCACGTTCATA 216003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633625845849200