Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 260 2e-64 >seq10 Length=460275 Score = 260 bits (288), Expect = 2e-64 Identities = 646/973 (66%), Gaps = 38/973 (4%) Strand=Plus/Plus Query 92744 AGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACATT 92803 ||||||||||||| | |||||||| || || | || ||| |||| |||||| || Sbjct 100826 AGAAATCTGCATCCATAGTAAATACTTTATCCTAT---TTTTTACTCATGACACCAGCTT 100882 Query 92804 TTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAAT 92863 ||| ||| || || ||| || |||| ||||| || || ||||||| | || ||| || Sbjct 100883 TTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATAT 100942 Query 92864 TCA-CTAGT-GATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAAT 92920 || | | | || |||||||| | || || |||| | | | ||| || | | | Sbjct 100943 CCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGC-ACCAAGAGCGAAAATT 101001 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 | ||||||||| |||||||| ||||| || ||| | |||||||||| | | Sbjct 101002 AGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAAT 101061 Query 92981 CGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATT 93040 ||| |||| || || | | ||| || || || || |||| || | | ||| Sbjct 101062 TCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATT 101121 Query 93041 TCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 || | ||| ||| | | |||| | || | || ||||| | ||| || ||||| Sbjct 101122 TCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAAA 101181 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || |||||||| ||||| |||| ||||||||| |||||| |||||||| ||||| | Sbjct 101182 TCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCATA 101241 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 ||| || || |||| |||||| || | | |||| |||||| || || || ||||| Sbjct 101242 AGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTCA 101301 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 || || || || || | | | ||| ||||| || |||| |||||||||| Sbjct 101302 ACAGCAGCGAAAGCAATTAGTCTTTCAGCAAA---TGAATCATTATCATTGATCCATTTC 101358 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || | ||| ||| | | || || || | | || |||| Sbjct 101359 ATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCATGGAGTAAGTAA 101418 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 | | || | ||| ||||| ||||| || || |||||||| |||||||||| Sbjct 101419 TTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAATGT 101478 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | ||| ||||| ||||||| ||||| ||||||||||| ||||| | || || |||||| Sbjct 101479 ATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTTCT 101538 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 | | ||| | | | | || |||||||| || ||||| || ||||| |||||| Sbjct 101539 GTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAGCC 101598 Query 93521 AATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAATCGGATAGATC 93579 |||| || || ||||| || || || || |||||| || |||||||| ||||| Sbjct 101599 AATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAA-TTTTTCCCAATCTTTAAGATC 101657 Query 93580 -----------------TTTT-------GAAAGATCGACTTCTTCGACAGTCCAAAA-CG 93614 |||| ||||||| | ||| || |||||||||| | Sbjct 101658 CTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAAAGCT 101717 Query 93615 ATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAA 93674 | ||| || || ||||||||||| ||| || || | || | |||||| || | |||| Sbjct 101718 AGCCTTGTG-TTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGAACAA 101776 Query 93675 AACGATTAGGGTT 93687 | | ||| || || Sbjct 101777 ACCTATTTGGATT 101789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556855391489480