Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 131 4e-25 seq6 109 1e-18 seq753 98.7 2e-15 >seq2 Length=701642 Score = 131 bits (144), Expect = 4e-25 Identities = 186/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | ||||| | ||| | || | || ||||||||| ||||| || Sbjct 527684 TACAT-TCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTA 527626 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| | ||| || | |||||||||||||| |||||| ||||| || || | | || | Sbjct 527625 GTCTGAGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATT---A 527569 Query 288360 ATC---TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||| |||||||||||||||||| |||||||| ||||| || || || | || Sbjct 527568 ATCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGA 527509 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT--T 288474 | ||| || || || ||||| || || || |||| ||||| ||||| || | ||| | Sbjct 527508 TGGTTCAACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTTACGAAAATTTACATGGT 527449 Query 288475 ATGTTATT-CTAATATT 288490 ||||||| ||||||| Sbjct 527448 TTGTTATTGTTAATATT 527432 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| | || | ||||| ||| ||||||||| ||||| ||||| | Sbjct 527907 TCCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGA 527848 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC--- 288362 ||| || | ||| |||||||||| |||||| |||||||| || | | || |||| Sbjct 527847 GAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATT---AATCGGG 527791 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||||||||| || | |||||| ||||| || || || | || | ||| Sbjct 527790 TGGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTC 527731 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| || || || |||| ||||||||||| || | |||| Sbjct 527730 AACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Score = 127 bits (140), Expect = 5e-24 Identities = 188/260 (72%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 288240 TACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATA 288299 ||||| |||||| | ||||| | ||| | || | || ||||||||| ||||| || Sbjct 528634 TACAT-TCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTA 528576 Query 288300 GTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGA 288359 ||| | ||| || | ||| |||||||||| |||||| |||||||| || | | || | Sbjct 528575 GTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATT---A 528519 Query 288360 ATC---TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 ||| |||||||||||||||||| |||||||| ||||| || || || | || Sbjct 528518 ATCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGA 528459 Query 288417 CGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 | ||| || || || ||||| || || || || | ||||| ||||| || |||| ||| Sbjct 528458 TGGTTCAACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCA-TAT 528400 Query 288477 GTTATTCTAATATTTTTAAT 288496 ||||| |||| | ||||| Sbjct 528399 -TTATT-TAATTTAATTAAT 528382 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | ||||| | ||| | || | || ||||||||| ||||| ||||| | Sbjct 528856 TCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGA 528797 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC--- 288362 ||| || | ||| |||||||||| |||||| |||||||| || | | || |||| Sbjct 528796 GAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATT---AATCGGG 528740 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||||||||| || | |||||| ||||| || || || | || | || Sbjct 528739 TGGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTT- 528681 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || ||||| ||||| || |||| ||||||||||| || | |||| Sbjct 528680 AACGTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACGAAGATTTACATT 528629 >seq6 Length=529034 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | ||| || | |||||||||||||| ||||| || || Sbjct 10907 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 10966 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | |||| |||||||||||| || || | ||||| ||||| || Sbjct 10967 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 11026 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | ||| || || || ||||| || || || || || ||||| || Sbjct 11027 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 11086 Query 288462 GAATATCTGCAT-TATGTTATTCTAATATTTTTAATAAT 288499 ||||| | ||| | | |||| |||| || |||||||| Sbjct 11087 AAATATTTACATGTTTTCTATTTTAAT-TTATTAATAAT 11124 Score = 109 bits (120), Expect = 1e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | ||| || | |||||||||||||| ||||| || || Sbjct 12344 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 12403 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | |||| |||||||||||| || || | ||||| ||||| || Sbjct 12404 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 12463 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | ||| || || || ||||| || || || || || ||||| || Sbjct 12464 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 12523 Query 288462 GAATATCTGCAT-TATGTTATTCTAATATTTTTAATAAT 288499 ||||| | ||| | | |||| |||| || |||||||| Sbjct 12524 AAATATTTACATGTTTTCTATTTTAAT-TTATTAATAAT 12561 Score = 107 bits (118), Expect = 5e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | |||| || ||| ||||| ||||| ||||| | Sbjct 10643 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 10702 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||||||||| ||||| || || || || | | |||| ||| Sbjct 10703 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 10762 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || | ||||| ||||| || || |||| ||| | ||| || Sbjct 10763 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 10822 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || || ||||| ||||| || | |||| Sbjct 10823 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 10871 Score = 107 bits (118), Expect = 5e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | |||| || ||| ||||| ||||| ||||| | Sbjct 11625 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 11684 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||||||||| ||||| || || || || | | |||| ||| Sbjct 11685 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 11744 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || | ||||| ||||| || || |||| ||| | ||| || Sbjct 11745 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 11804 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || || ||||| ||||| || | |||| Sbjct 11805 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 11853 Score = 107 bits (118), Expect = 5e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | |||| || ||| ||||| ||||| ||||| | Sbjct 14405 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 14464 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||||||||| ||||| || || || || | | |||| ||| Sbjct 14465 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 14524 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || | ||||| ||||| || || |||| ||| | ||| || Sbjct 14525 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 14584 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || || ||||| ||||| || | |||| Sbjct 14585 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 14633 Score = 100 bits (110), Expect = 7e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | ||| || | |||||||||||||| ||||| || || Sbjct 11889 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 11948 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | |||| |||||||||||| || || | ||||| ||||| || Sbjct 11949 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 12008 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | ||| || || || ||||| || || || || || ||||| || Sbjct 12009 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 12068 Query 288462 GAATATCTGCATT 288474 ||||| | |||| Sbjct 12069 AAATATTTACATT 12081 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | ||| || | |||||||||||||| ||||| || || Sbjct 14669 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 14728 Query 288342 GAT-CAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 || || | | |||| |||||||||||| || || | ||||| ||||| || Sbjct 14729 AATAGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTG 14788 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 || |||| ||| | ||| || || || ||||| || || || || || ||||| | Sbjct 14789 CATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGT-TTTCCAGTGAGTGTCTTAA 14847 Query 288461 CGAATATCTGCAT-TATGTTATTCTAATATTTTTAATAAT 288499 | ||||| | ||| | | |||| |||| || |||||||| Sbjct 14848 CAAATATTTACATGTTTTCTATTTTAAT-TTATTAATAAT 14886 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | ||| || | |||||||||||||| ||||| || || Sbjct 12117 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 12176 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || | | |||| |||||||||||| || || | ||||| ||||| || Sbjct 12177 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 12236 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| | ||| || || || ||||| || || || || || ||||| || Sbjct 12237 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGT-TTTCCAGTGAGTGTCTTAAC 12295 Query 288462 GAATATCTGCATT 288474 ||| || | |||| Sbjct 12296 GAAAATTTACATT 12308 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| | | |||| ||| ||| ||||| ||||| ||||| | Sbjct 9659 TCCACCTCTCAATCTAAGAAAAAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCTGA 9718 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||| ||||| ||||| || || | || | | |||| || Sbjct 9719 GAGTGTTCTTCCGTCTTTTAATTACTTTCCAGCAAAAACTAGTCTTTTTTGATCGGGGGG 9778 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| ||| || |||||| ||||| || || |||| ||| | ||| || Sbjct 9779 GATTCCTTC-TTAGTCTTGATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 9837 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || || || || || ||||| | ||| |||| |||| Sbjct 9838 ATCAAGGGTGATTGTTTTTCCAGTTAGTGTCTTAATGAAAATCTACATT 9886 >seq753 Length=230 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| | | |||||| || | |||| || ||| ||||| ||||| ||||| | Sbjct 14 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 73 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || | |||||||||||||| ||||| || || || || | | |||| ||| Sbjct 74 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 133 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || || | ||||| ||||| || || |||| ||| | ||| || Sbjct 134 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 193 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || ||||| || || || || || ||||| ||| Sbjct 194 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179642656171806