Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 8e-11 seq2 82.4 8e-11 >seq6 Length=529034 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | | || || || | ||| ||||||||||||||||| |||| Sbjct 10872 CCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 10931 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| |||| | ||| ||||| || ||||||| | || |||| ||| Sbjct 10932 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 10991 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||||| ||||| | | | || || | ||| ||| Sbjct 10992 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 11051 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| ||||| || || || ||||| ||||| |||| ||| || Sbjct 11052 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATGTT 11101 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | | || || || | ||| ||||||||||||||||| |||| Sbjct 11854 CCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 11913 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| |||| | ||| ||||| || ||||||| | || |||| ||| Sbjct 11914 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 11973 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||||| ||||| | | | || || | ||| ||| Sbjct 11974 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 12033 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| ||||| || || || ||||| ||||| |||| |||| Sbjct 12034 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATT 12081 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || | | || || || | ||| ||||||||||||||||| |||| Sbjct 12309 CCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 12368 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || | |||| |||| | ||| ||||| || ||||||| | || |||| ||| Sbjct 12369 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 12428 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | |||||||| ||||| ||||| | | | || || | ||| ||| Sbjct 12429 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 12488 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||| ||||| || || || ||||| ||||| |||| ||| || Sbjct 12489 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATGTT 12538 >seq2 Length=701642 Score = 82.4 bits (90), Expect = 8e-11 Identities = 183/274 (67%), Gaps = 12/274 (4%) Strand=Plus/Minus Query 41948 TTACTGTA---AAATATTATATATATTAAT------TTATCGA---CCTCCTCTTAAACG 41995 |||||||| |||| | ||||||||||| ||||| || ||||| | | Sbjct 527952 TTACTGTAGGTAAATGTAATATATATTAAAGCTCAATTATCAGTTTCCACCTCTAAGTCT 527893 Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 |||||||||||| | |||| || |||||||||||||| || | || || | | || Sbjct 527892 CAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATC 527833 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 |||| | || || ||||| || |||| | | |||| ||| | | || ||||| Sbjct 527832 TTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTGTC 527773 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 |||||| ||||| | | | ||||| | ||| ||||| | |||||||| Sbjct 527772 TTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGT 527713 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || | ||||| || ||||||| |||| Sbjct 527712 TTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543207524045680