Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 89.7 5e-13 >seq2 Length=701642 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| ||||| |||| || || | ||||||| | | || || Sbjct 527648 GTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCGTCTTCTAATTATTTTCCA 527589 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || | | | ||||| || ||||||||||| ||||| | |||| ||||| Sbjct 527588 GCGAAAATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATCTTGGA-TTTTAGCTTT 527530 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || | || | ||| || | || || || | ||| | ||| || || ||||| || Sbjct 527529 GACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCTGTCAATGT 527470 Query 64426 TTTTACGAAAATTTGCAT 64443 ||||||||||||| ||| Sbjct 527469 CTTTACGAAAATTTACAT 527452 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||||||||| ||||| |||| || || | | ||||| | | || ||| Sbjct 528598 GTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCG 528539 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || | | | ||||| || ||||||||||| ||||| | |||| ||||| Sbjct 528538 GCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATCTTGGA-TTTTAGCTTT 528480 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || | || | ||| || | || || || | ||| | ||| || || || || || Sbjct 528479 GACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTTCCTGTTAATGT 528420 Query 64426 TTTTACGAAAATTTGCATTTTAAT 64449 ||||||||||||||||| || || Sbjct 528419 CTTTACGAAAATTTGCATATTTAT 528396 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| | ||||| || |||||||||||||| ||||| |||| || || | | Sbjct 527895 TCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCC 527836 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| | | || ||||| | || || | | | ||||| || ||||||||||| Sbjct 527835 ATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTT 527776 Query 64348 TTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 |||| | |||| ||||| ||| | || | ||| || | || || || | ||| | Sbjct 527775 GTCTTAGA-TTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGA 527717 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || ||||| || || ||||| |||| |||| Sbjct 527716 TGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639947199880