Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq39 107 2e-18 seq6 82.4 7e-11 >seq2 Length=701642 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| |||| || || |||||||| ||||| ||||| || || Sbjct 528631 ATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCT 528572 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || |||| |||||| ||| | || | || || | || || Sbjct 528571 GAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 528512 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| ||||| ||||| || || | ||||| || | || Sbjct 528511 GGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCA 528452 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || |||| || ||||| ||||||||||| Sbjct 528451 ACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCAT 528402 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | || ||||| |||| || || |||||||| ||||| ||||| || || Sbjct 527681 ATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCT 527622 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||| |||||| ||| | || | || || | || || Sbjct 527621 GAGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAATCGGGT 527562 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| ||||| ||||| || || | ||||| || | || Sbjct 527561 GGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCA 527502 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || | || ||||| ||||||| ||| Sbjct 527501 ACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTTACGAAAATTTACAT 527452 >seq39 Length=303829 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || ||||||||||||| |||||| ||||| | ||| | || || Sbjct 63059 ACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAAAGAGTTCTTCCGTCTTCA 63000 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||||||| | || | || || || || || ||||||||||| || || | | Sbjct 62999 AGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGAATGCCTTCCTTGTCCTAA 62940 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| ||| | || || | |||||| |||| ||||| || || || | || || Sbjct 62939 ATCTTTGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGACATCAAGTGTGATTGTCTTA 62880 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||| ||||| |||||||||| ||| Sbjct 62879 CCTGTTAAGGTTTTAACAAAAATTTACAT 62851 >seq6 Length=529034 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | |||| || || |||||||||||||| ||||| || || Sbjct 10869 ATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCA 10928 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||| ||||| || | || | || || || || || Sbjct 10929 GAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 10988 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||| |||||| ||||| || || | || || || | || Sbjct 10989 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 11048 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || || || || ||||| |||| ||| Sbjct 11049 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACAT 11098 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | |||| || || |||||||||||||| ||||| || || Sbjct 11851 ATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCA 11910 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||| ||||| || | || | || || || || || Sbjct 11911 GAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 11970 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||| |||||| ||||| || || | || || || | || Sbjct 11971 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 12030 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || || || || ||||| |||| ||| Sbjct 12031 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACAT 12080 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | || | |||| || || |||||||||||||| ||||| || || Sbjct 12306 ATTCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCA 12365 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || |||| ||||| || | || | || || || || || Sbjct 12366 GAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGT 12425 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || |||| |||||| ||||| || || | || || || | || Sbjct 12426 GGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 12485 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || || || || ||||| |||| ||| Sbjct 12486 ACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACAT 12535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451998809918920