Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq86 408 5e-109 seq27 214 2e-50 seq41 167 3e-36 seq90 107 2e-18 seq10 107 2e-18 seq28 100 4e-16 seq50 98.7 1e-15 seq15 95.1 2e-14 >seq86 Length=170371 Score = 408 bits (452), Expect = 5e-109 Identities = 1056/1593 (66%), Gaps = 27/1593 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||||||| | || | || || || || | ||| | |||||| || || || || || Sbjct 115061 TCATCTTCAGCCTTGAATTTCTCAGCCTCCTTGACTAACTTTTCGATATCATCCTTTGAC 115120 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 ||||| ||||| ||||| ||||| || || || | | || || |||||||||||| Sbjct 115121 AATCTTCCCTTGTCATTGGTAATTGTGATTTTATTTGTCTTCTTTGATGCCTTATCTTCA 115180 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| | |||| |||||||| |||||| |||||| || | ||||| ||| Sbjct 115181 GCATGAATGTTCATGATACCATTCTCATCAATATCGAATGAGACTTCAATTTATGGAACT 115240 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTT---ATCC 6805 || || || || | || |||||| |||| |||| ||| ||| ||| |||| Sbjct 115241 CCTCTTGGAGCTGGTGCAATACCATCCAAATTAAATTAACC---TAACTTGTGGCAATCC 115297 Query 6806 GTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGT 6865 | | | | | | ||| || ||||| |||| ||| ||| | |||||||| || Sbjct 115298 TTTGTCATTTATCTTTCTCCCTCATACACTTAAATCAACACTCCTGGTTGATTGTCAGCA 115357 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 |||| ||| ||| | |||||| | ||| || || || ||||| ||||| | Sbjct 115358 TATGTTGTGAAAGTTTATGATTTCTTTGTTGGGATTGTTGTGTTTCTTGGAATGAGAACA 115417 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||||| || || ||||| | || | ||||| || || || || || | ||| Sbjct 115418 GTCATAACTCCTCCAGCTGTTTCAATACCCAAAGACAATGGGGTAACATCTAACAATAAA 115477 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || | || |||| || |||| || || | || || ||||| || | || || Sbjct 115478 AGATCCTTGACTTATTCATTTCCTTATCCTGTAAGAATAGCAGCTTGCACTGCAGCACCA 115537 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | ||||| | ||| || || || || || || Sbjct 115538 TAAGCAACAGCCTCATCTGGGTTGATTGACTTATTTAATTCCTTTCCATTGAAGTATTCT 115597 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || || || ||||||| ||| |||||||||||||| || | || | Sbjct 115598 CTCAATAAATCTTAAACCTTTGGGATTCTTGTTGATCCACCGACCAACACAACCTCGTGG 115657 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | || || ||| ||| || ||| |||||||| ||| || |||| Sbjct 115658 ATTTAATTCTTTGAGATACCTGAATCCTTAAGAACCTTTTCGACTGGTGGAATGCATTCC 115717 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| |||||||| ||||| || || | ||||| | || | |||||| Sbjct 115718 TTGAACATACTCATACACAACTCCTCGAACTTAGCTCTTGTAATTGTTGAGTTGAAATCC 115777 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT---GCCGTCGAAGATAACGTT 7342 | || || | ||||| |||||| |||||||| || | ||| | ||| | Sbjct 115778 TCATTATCACCCAAAGCATCAACTTCAATTGTTGTTTGATTGGCTGATGAA-AGAAC--T 115834 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | |||||| | ||||| |||| | | | | | | || || |||| Sbjct 115835 CTCTTTGCTCTTTCACATTGAGTTCTAAGTCTTCTCAATGATCTTGGATTTTATCTAATA 115894 Query 7403 TCT-TTCTTATGTTTACGTT-TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGA 7460 || ||| | || | | | || ||| || | | | || | | ||| | Sbjct 115895 TCAATTCCCTTCTT--CTTCATGAATTCTGCACAACAATACTCAACCAACTTGTTATCAA 115952 Query 7461 AATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTT 7520 ||||||||||||||||||| ||||| || || || || ||||||||||| | || ||| Sbjct 115953 AATCTTCACCACCCAAGTGAGTATCTCCGGCAGTTGCCTTGACTTCAAAAACTCCATCTT 116012 Query 7521 CAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCG 7580 ||||| ||||| || |||||||| |||||||| |||| || || ||||| |||| | Sbjct 116013 CAATGGCCAACAATGACACATCAAATGTACCACCTCCCAAATCGAAGATGAGAACGTGCT 116072 Query 7581 TATCGTCGTCTTTG--TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || | ||||| |||||||| | ||| || || ||||| || || |||||||| || Sbjct 116073 CCTCACC--CTTTGCCTTCTTATCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTT 116130 Query 7639 AATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697 ||||| | || ||| |||| || | ||| | | ||||| || || || | || | Sbjct 116131 GATAATTCTCAAAACA-TTCATTCCTGAAATGGCGCCAGCATCCTTTGTAGCCTATCTCT 116189 Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757 |||||||| || || || || || || | || || | |||||| |||||| | | Sbjct 116190 ATGAATCGTTGAAATAAGCTGGCACTGTGATAACAGCCTTTGTGACTGTCTTACTCAAGT 116249 Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817 | | ||| || | || |||||||| || || ||||| || |||||||| || | | Sbjct 116250 AAGCTTCTGCTGTCTCCTTCATTTTTGTGAGCACCATGGAGGAAATCTCCTCTGGATGGA 116309 Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877 | | || || ||||| ||| | | ||| ||||||| ||||| || |||| || | Sbjct 116310 ATTTCTTGGTCTCACCTTTATACTTAACCACAATCATTGGTTTGTCATCAGCTCCTGACT 116369 Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGT-TGGTCCGAAAACTTTCTT 7936 |||||| | | |||| || | || | || || |||| ||| | || |||||| Sbjct 116370 CAACCTTGAATGGCCAAAGCTTGGTGTCCTTTTAGA-CTGTACTGTCAGCGAATTTTCTT 116428 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 ||||| | | |||||||||||||||||||||| | ||||| | || ||| ||||| Sbjct 116429 CCGATCAATCTCTTTGCATCAAAAACTGTGTTTGTTGGGTTTCTTGCCACTTGATTCTTG 116488 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || || ||||| | ||| || || ||||| | ||||| ||||| || ||| Sbjct 116489 GCAGCATCACCAATAAGTCTTTCTGTA---TCAGTAAAACCAACGTATGATGGTGTTGTT 116545 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCAC 8116 | || |||| || || | |||||||| || ||||| ||| || ||||| || Sbjct 116546 CTGTTTCCTTAATCATTGGGGATAATTTCGACTTTATCGTTAATCCACACTCCGACACAG 116605 Query 8117 GAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || || |||||||||||||| || ||||||||| Sbjct 116606 GAGTATGTTGTTCCTAAATCTATTCCGATTGCT 116638 >seq27 Length=350902 Score = 214 bits (236), Expect = 2e-50 Identities = 476/707 (67%), Gaps = 8/707 (1%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| |||||||| ||||| || |||||||| || | || ||||| |||||||| || || Sbjct 118662 ATCAAAATCTTCTCCACCTAAATGTGTATCACCAGATGTTGCTTTAACTTCAAATATTCC 118603 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | ||||| | | ||| |||||||| || || || || | || | || | || Sbjct 118602 TTAGTCAATTATCAGCAAGCTCACATCAAAAGTTCCTCCTCCTAAATCGATGATCATGAC 118543 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || | | || || ||| | || || || |||| || || || ||||| Sbjct 118542 ATTTTTCTCACCATTTTATTTAGAATCAAATCCATAAGCAATAGATGCTGCTGTGGGTTC 118483 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || | ||| | || || || || | | || || || || |||| || Sbjct 118482 GTTGATGATTCTCAGAACATGGAGCCCTGCTATCGCACCTGCGTCCTTGGTAGCTTATCT 118423 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| ||||| || || || || || | || || | | ||| | || || | Sbjct 118422 TTATGAATCATTAAAATAAGCAGGAACTGTAATAACAGCATTTTTTACTGTTTTTCCTAA 118363 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 | | | ||| || | ||| ||||||| || |||||||| || ||||| ||||| | Sbjct 118362 AAATGCTTCTGCAGTTTCTCTCATTTTTGTCAGAACCATTGAAGAAATTTCTTCTGGATG 118303 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 ||| | || |||| || || || | |||| |||| || |||||||| | | |||| Sbjct 118302 AAATTTCTTTATTTCCCCTTTGAACTTAACTACAATTATAGGTTTATCATCTGGTCCGGC 118243 Query 7876 GATAACCTTATACGACCA-ATCTTTCATATCGTCTTGGACCTGTTGGTCCGA-AAACTTT 7933 |||||| | | ||| | |||| ||||| | || || |||| | || ||||||| Sbjct 118242 CTCAACCTTGAATGGCCATAACTTT-ATATCCTTTTAAAC-TGTTTATTCGCTAAACTTT 118185 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 ||||| ||||| | || |||||||||||||| || || || ||| | ||| ||| || Sbjct 118184 CTTCCAATAAGTCTTTTAGCATCAAAAACTGTATTATTTGGATTCCTAGCTACTTGATTT 118125 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 || || || || || || | | ||| || | ||||| || || || || ||||| Sbjct 118124 TTAGCTGCATCACCAATTAATCTTTCTGAAT---CAGTAAATGCTACATAGGAAGGGGTA 118068 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACG 8113 |||| || ||||| || || || || ||||| || || ||| | || || || Sbjct 118067 GTTCTGTTTCCTTGATCATTTGCTATTATTTCCACTTTATCATTTATAAATACTCCTACA 118008 Query 8114 CACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAGTCATTTT 8160 || ||||| || ||||||||||| ||||| ||||||| | || |||| Sbjct 118007 CAGGAATAAGTAGTTCCTAAATCTATACCAATTGCTT-ATTCTTTTT 117962 >seq41 Length=296967 Score = 167 bits (184), Expect = 3e-36 Identities = 260/366 (71%), Gaps = 7/366 (2%) Strand=Plus/Minus Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 ||||||||||||| || |||||||| ||||| || | || || |||||||||| | || Sbjct 7239 AATCGAAATCTTCTCCTCCCAAGTGAGTATCTCCTGATGTAGCAATGACTTCAAATACAC 7180 Query 7515 CTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574 | ||||| | || | |||||||| || |||||||| || | || |||| | | Sbjct 7179 CATTATCAATTGTCAAGATAGAAACATCGAAAGTACCACCTCCTAAATCGAAAACTAAAA 7120 Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634 ||| | || | ||||| || ||| ||||| || || ||||| || || ||||||| Sbjct 7119 TGTTTTTTTCTCCATCTTTTTT---ATCAAGACCATAAGCAATAGCTGCAGCAGTTGGTT 7063 Query 7635 CATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 |||| | ||| | || ||| || || |||| ||| ||| | |||||||| || |||||| Sbjct 7062 CATTTAAAATTCTGACAACA-TTAAGACCAGAAATTGTTCCTGCATCTTTGGTAGCTTGT 7004 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 | || | ||| || || || || || || || || || || | | || ||||| || Sbjct 7003 CTTTAAGCATCATTGAAATAAGCTGGTACAGTAACTACTGCATTGATAACCTTCTTTCCT 6944 Query 7754 AGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 | ||| | ||| | || || ||||| |||| |||| ||||| | ||| || ||||| | Sbjct 6943 AAATATGTTTCTGAAATTTCCTTCATCTTTGTTAAG-ACCATAGCTGAGATTTCTTCTGG 6885 Query 7813 CGCAAA 7818 ||||| Sbjct 6884 TGCAAA 6879 >seq90 Length=167406 Score = 107 bits (118), Expect = 2e-18 Identities = 216/319 (68%), Gaps = 1/319 (0%) Strand=Plus/Minus Query 6677 GCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTA 6736 |||||||||| ||| |||| | ||||||||| ||||||| ||||| | |||| | Sbjct 9074 GCCTTATCTTTGGCAGACACATGTACAATACCATTGGCATCAATGTCGAATGTGACATCA 9015 Query 6737 ATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAA 6796 |||| |||| || || || || | ||| ||||| | ||| || ||| || | || Sbjct 9014 ATTTATGGTACTCCTCTTGGAGCAGGTGGGATACCTGATAAGTCGAATTGTCCTAACAAT 8955 Query 6797 CTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGA 6856 |||| || | ||| | | | ||| |||| | ||| |||||| || ||| |||| Sbjct 8954 TTGTTGTCAGCTGCCATTTCTCTTTCTCCTTAGAAAACTCTAATTGAGACTACAGTTTGA 8895 Query 6857 TTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGA 6916 ||||| || ||||| | |||| ||||| | ||| || || || ||||| || Sbjct 8894 TTATCACTGGCAGTTGAATAAGTTTGACTCTTCTTGGTTGGGATGGTTGTGTTTCTTGGG 8835 Query 6917 ATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCC 6976 || | || | | || || | |||||| | || || || || ||||| |||||| Sbjct 8834 ATCATTTTTGTGAACACTCCTCCAAGAGTTTCAATACCGAGGGAAAGGGGTGTGACGTCC 8775 Query 6977 AAGAGTAACAGGT-CTTGA 6994 |||||||| || | ||||| Sbjct 8774 AAGAGTAAGAGTTCCTTGA 8756 >seq10 Length=460275 Score = 107 bits (118), Expect = 2e-18 Identities = 501/775 (65%), Gaps = 28/775 (4%) Strand=Plus/Plus Query 115063 TAATCACCGACGCGCTTTTCAAAAAAGTTTGTTTTGCCGTCGAGTGATATATTCTCCATA 115122 |||||||| || | |||| || ||||| ||||| || | ||| || || | ||||| Sbjct 100888 TAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCATATCCATC 100947 Query 115123 AAATCAAAGGGATTTTTCGTGTTCCAGATTTTATTGTGACCCACTTGTTTTGATAA-TCG 115181 | || || ||||| ||| || | || || | | | ||| | || | || Sbjct 100948 CACTCGAAAGGATTCTTCACATTGAAAATCTT-TGGAGCACCAAGAGCGAAAATTAGTCT 101006 Query 115182 ATCCGCAACATATTCGATATACTCCGACATTTTACCGGAATTCATACCTATGAGA-CTAC 115240 ||| |||||| |||| || || | ||| |||||||| || || | |||| Sbjct 101007 ATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAATTCTAC 101066 Query 115241 ACGGAAGTGCGTCCGTAATGAATTCTTTTTCGATTGAAACGGCGTCTCTTATAATTTCTT 115300 | || ||| || |||||||||| ||||| || | ||| || | |||||||| | Sbjct 101067 TGGTAA-TGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATTTCAT 101125 Query 115301 CAATTGTATTTTGAGATGGTTTGTTTTTTAAC---ATG-TTGAATAATTCAACCGCAAAT 115356 ||| | |||| ||| | |||| || || ||| ||| | | | | ||||| Sbjct 101126 GGATTCT---TTGAT-TGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAAAA 101181 Query 115357 TCTTGGTGCATACCTTCATCTCGACTTATGAGTTCATTACTAAAACATAAACCTGG---A 115413 || || | |||||||||| ||| | |||||| || || ||||| | Sbjct 101182 TCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCATA 101241 Query 115414 AGTAACCCTCTCTTTTTTAACCAAAAAATAGCACAAAAACTACCCGAGAAGAATATACCT 115473 ||| | ||||||||| | ||||||||| ||||||||| ||| |||||||| || ||| Sbjct 101242 AGTGA---TCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCT 101298 Query 115474 TCAACACACGCAAAGGCTAATAAACGTTCAGCAAATGGTCGTTTCTTATCAAACCACTTC 115533 |||||| || || || | || | ||||||||||| || | || | ||| ||| Sbjct 101299 TCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTGATCCATTTC 101358 Query 115534 ATAGCCCATTTCGCCTTTCTTTCGA--TACACGGA-ATTGTTTGAATTGCTTCGAATAAT 115590 || |||||| ||| |||||| || |||| | | |||| | ||| || | || ||| Sbjct 101359 ATTGCCCATGATGCC-TTCTTTTGAATTACAGGCACATTG--TCAATGGCATGGAGTAAG 101415 Query 115591 TGTTTCTTTTCGCTAGAATTTTTTATATACTTGTCTATGAGTTTACTGTACGTTTCACCG 115650 | || ||||| | || | || || | || || | | || |||||| Sbjct 101416 TAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAA 101475 Query 115651 TGTACCATTTCATTGTGAGATTGATAGGCATAAAATGATCGAGCCTCCGTAAGTTGTATT 115710 |||| |||| || | || | | |||| || ||| || || | || ||| | | Sbjct 101476 TGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACT 101535 Query 115711 TCATCTGCAAAATTATTAT-TTATATTTTCAAAAACTATACCATCAGAACCAGCaaaaaa 115769 || | | || |||| |||| || || ||| || || |||||| ||||||| || Sbjct 101536 TC-TGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAA 101594 Query 115770 aGCTAAAATATATTTTATAAAATGTTTTTCATTATCAC-TTAATTCATTCCAATC 115823 ||| || | |||||| ||||| || ||||| || | || |||||| | |||||| Sbjct 101595 AGCCAATACATATTTAATAAAGTGCTTTTC-TTCTGACTTTAATTTTTCCCAATC 101648 >seq28 Length=349674 Score = 100 bits (110), Expect = 4e-16 Identities = 248/370 (67%), Gaps = 15/370 (4%) Strand=Plus/Minus Query 7455 AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATAC 7514 |||| |||||||| || || || |||||||| || | || | || |||||||| | | Sbjct 255217 AATCAAAATCTTCTCCTCCTAAATGTGTATCTCCTGATGTAGATTGTACTTCAAATACTC 255158 Query 7515 CTCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 | ||||| | ||| || |||||||| || |||||||| |||| ||||| | | Sbjct 255157 CATTATCAAT-TGTAAGAATTGAAACATCGAAAGTACCACCTCCCAAATCAAATACCAAA 255099 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTACGCGATAGCCGCCGCCGTT 7630 | || | || ||||| | ||| ||| || ||||| || ||||| || || ||| Sbjct 255098 ATATTAG-AT-----TCTTTTTCCTTTGAATCAAGTCCGTAAGCAATAGCTGCAGCTGTT 255045 Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCG 7688 |||||||| | || | || | || | || ||||| ||| | |||||||| || | Sbjct 255044 GGTTCATTTAAGATTCTAACAACATTTAATCCTGCAAT--TTGACCTGCATCTTTAGTTG 254987 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 ||| || || | ||| || ||||| || || || || || || || | | | | | Sbjct 254986 CTTATCTTTATGCATCATTGAAGTAAGCTGGTACAGTGACAACTGCATTCACAATAGTTT 254927 Query 7749 TACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTT 7808 || | ||| ||| || || |||||||||||| | | ||||| | |||||| | Sbjct 254926 GTCCCAAATATCCTTCAGCAATCTCTTTCATTTTGATTAACACCATGGCACTAATCTCCT 254867 Query 7809 CAGCCGCAAA 7818 | | ||||| Sbjct 254866 CTGGGGCAAA 254857 >seq50 Length=273886 Score = 98.7 bits (108), Expect = 1e-15 Identities = 327/498 (66%), Gaps = 27/498 (5%) Strand=Plus/Minus Query 11280 ATCAAATCTACCGGGGCGTAATAAC-GCATCGTCGAGTATATCGATACGGTTTGTTGCAC 11338 ||||||||| || || | || ||| || ||| |||| || | | ||| |||||| Sbjct 264459 ATCAAATCTTCCAGGTC-TAGTAAGTGCTGGGTCAAGTAATTCTTTTCTGTTAGTTGCAG 264401 Query 11339 CTATAACAACAATTTCAGTTTCATTCTCGAAACCATCCATTTCTGTTAATAATTGGTTAA 11398 ||| || | | | ||| ||| | | || ||||||||||| ||||||||| || | Sbjct 264400 CTAGTACTATTACATTAGTATCAGTTCCAAATCCATCCATTTCAACTAATAATTGATTTA 264341 Query 11399 TTGTTTGTTCACGCTCATCGTTTGCCGCAAACCCATT----CATACTTCTTTTCTTACCA 11454 || | || | ||||| || | ||| ||| ||| || ||||||| || Sbjct 264340 GAGTATTATCTCTTTCATCATTACC-----ACCTATTTTAGCAT-CTCTTTTTCTT-CCT 264288 Query 11455 ATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTT-TCACGTGCCAATTCAAA 11513 | ||||| |||||||| ||||| || || | || |||||| | || ||| ||| Sbjct 264287 ACAGCATCTATTTCATCAATAAATATGATGCTTGG-TGATTTAGCTTTAGCTTATTTAAA 264229 Query 11514 TATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAACGAACGATGACCCCGA 11573 || || | ||||| |||| || || || |||||||| || || || ||| | Sbjct 264228 TAAGTCTCTAACTCTACTTGCTCCAACACCAACAAACATCTCCACAAAATCTGATC---- 264173 Query 11574 ACACTGAATAAAAGGAACGGAA-----GATTCACCCGCTATAGCACGTGCTAAAAGTGTT 11628 |||| | |||| ||| |||| | || || || ||| ||| | | |||| Sbjct 264172 -CACTAACGAAAAAGAATGGAACACCTGCCTCTCCTGCACAAGCTTTTGCCACCATTGTT 264114 Query 11629 TTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTTTAGCACCGGTACCA 11688 ||||| ||||||||| |||| | ||||||||| || |||| ||||||||| | | Sbjct 264113 TTACCAGTACCTGGTGGTCCTGCAAGTAATGCACCTCTGGGTAATTTAGCACCCATTTCC 264054 Query 11689 AAGTACTTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCTCATCTTTCGCGCTA 11748 ||| || || ||| ||||||||||||| ||| | || ||| || || | Sbjct 264053 TTGTATTTACGAGGTTTCTTAAGAAAATCAACAAATTCCTTGATTTCAAGCTTTGCTTCA 263994 Query 11749 TCTATACCCTG-AACATC 11765 |||| | |||| |||||| Sbjct 263993 TCTA-ATCCTGCAACATC 263977 >seq15 Length=399423 Score = 95.1 bits (104), Expect = 2e-14 Identities = 208/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Minus Query 11442 TCTT-TTCTT--ACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTTTC 11498 |||| ||||| |||||| ||| |||||||| ||||| ||||| ||| |||| Sbjct 394081 TCTTCTTCTTCCACCAATACTATCTATTTCATCGATAAAAATAATTGCTGGTGCCTTTTG 394022 Query 11499 ACGTGCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAAC 11558 | ||| | ||| ||||| | ||||| ||| || || ||||||||||||||| | Sbjct 394021 TCTTGCTGCCTTAAAAATATCTCTCACTCTAGATGCACCAACTCCTACAAACATTTCATC 393962 Query 11559 GAACGATGACCCCGAACACTGAATAAAAGGAACGGAA----GATTCACCCGCTATAGCAC 11614 || ||| || || || | |||||| || | | ||| || || | || | Sbjct 393961 AAATTCTGATCC---ACTCTTA-TAAAAGAAAGCACATCCTGCTTCTCCAGCCAATGCTC 393906 Query 11615 GTGCTAAAAGTGTTTTACCTGTACCTGGTTTACCTGTTAATAATGCACCCCTTGGTATTT 11674 ||| || ||||||||||| ||||| || ||| ||||| ||| |||||| || Sbjct 393905 TTGCCAACAGTGTTTTACCAGTACCAGGAGGTCCTACCAATAAAATTCCCTTTGGTAATT 393846 Query 11675 TAGCACCGGTACCAAAGTACTTTTCTGGCGCCTTGAGAAAATCAACAATTTCTTCGAGCT 11734 | ||||| | | || ||| || | || ||| ||||| ||||||||||| || | || Sbjct 393845 TGGCACCAGAATCAGTGTATTTCTTGGGATTCTTAAGAAATTCAACAATTTCCTCCAACT 393786 Query 11735 CATCTTT 11741 | ||||| Sbjct 393785 CTTCTTT 393779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635126631272680