Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq38 145 9e-30 >seq38 Length=305773 Score = 145 bits (160), Expect = 9e-30 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| ||||| |||||||||| | |||||| ||||||||||| ||||||||| | | Sbjct 130998 CAAAGATTTGGAGTTCCTATGGGTTTTGGAGGACCTCATGCTGCCTTCTTTGCAGTAGAA 130939 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || ||||| ||||| || || || | ||| | ||| ||| |||| | ||||| Sbjct 130938 GATGCCTATAAAAGAAAAATGCCAGGACGTATTATCGGTATTTCAAAAGATGCTCAAGGT 130879 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || || || ||| | |||| || |||||||| || |||||||| ||||| || ||| Sbjct 130878 AAACCTGCTTATAGAATGTCACTTCAAACTAGAGAACAACATATCAGAAGAGAAAAGGCA 130819 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCA 154007 ||| || || || || || | ||||| | ||||| ||| ||||| | ||||| | Sbjct 130818 ACCTCAAATATTTGTACGGCATAAGCACTTTTAGCTAACATGGCTGGAATGTATGCTGTC 130759 Query 154008 TATCATGGTGCAGATGGA 154025 ||||||||| || | ||| Sbjct 130758 TATCATGGTCCATAAGGA 130741 Score = 118 bits (130), Expect = 1e-21 Identities = 163/226 (72%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 153207 ATAGGTCAAGGATACTATGGAACCATTACACCC-CCA---GTCATACAGCGAAACGTTCT 153262 || || ||||| | |||||| || |||| | ||| || |||| ||||| ||| | Sbjct 131556 ATTGGACAAGGTTTCTATGGTAC----ACACACTCCATACGTGATACTCCGAAATGTTTT 131501 Query 153263 TGAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAG 153322 || | ||| | ||||||||||| || ||||| || ||||||||||||| | || || Sbjct 131500 AGAAGACCCTGGATGGTACACATCCTATACTCCTTACTAAGCTGAGATATCATAAGGTAG 131441 Query 153323 ATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGC 153382 |||||| || || |||||||| |||| || | |||||| | |||||| | | | Sbjct 131440 ATTGGAGGCATTGCTCAATTACTAAACTGTCGTAACAGAATTAACAGGAATGGATGTTTC 131381 Query 153383 AAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || |||||| |||| |||||||| || || || | ||||||||| Sbjct 131380 TAATGCATCTTTATTGGATGAAGCCACAGCTGCTGGTGAAGCAATG 131335 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 154869 TGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATA 154928 ||||||||||| ||||| ||||| || ||||||| | |||| | | | | | | || Sbjct 129893 TGTATTATGATCACATATCCATCAACTTATGGTGTTTATGAAGATTAAACCAAAAAAATC 129834 Query 154929 TGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCA 154988 | | | ||||| ||||||| || ||| | ||||| || ||| | ||||| Sbjct 129833 ATTGAATTAATTCATTTACATGGTGGATTAGTGTATATGGATGGTGCCAATATGAATGCT 129774 Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 | || ||| | | |||| || | | ||||| ||||| || || | || |||||| Sbjct 129773 TAAGTTGGATTTACTTCACCAGGTTATTTAGGTGCTGATGTTTGCCACTTGAATTTACAT 129714 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||| || |||||||| ||||| ||||| || ||||||| || | ||| Sbjct 129713 AAAACATTTGCCATCCCACATGGTGGTGGTGGTCCAGGTTTAGGTCCAATTGCTGT 129658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579207174395680