Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq38 145 9e-30 >seq38 Length=305773 Score = 145 bits (160), Expect = 9e-30 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| ||||| |||||||||| | ||||| ||||||||||| ||||||||| | | Sbjct 130998 CAAAGATTTGGAGTTCCTATGGGTTTTGGAGGACCTCATGCTGCCTTCTTTGCAGTAGAA 130939 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 || ||||| ||||| || || || | ||| | ||| ||| |||| ||||| Sbjct 130938 GATGCCTATAAAAGAAAAATGCCAGGACGTATTATCGGTATTTCAAAAGATGCTCAAGGT 130879 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 || || || ||| | |||| || |||||||| || |||||||||||||| || ||| Sbjct 130878 AAACCTGCTTATAGAATGTCACTTCAAACTAGAGAACAACATATCAGAAGAGAAAAGGCA 130819 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCA 158682 ||| || || || || ||| ||||||| | ||||| ||| |||| | ||||| | Sbjct 130818 ACCTCAAATATTTGTACGGCATAAGCACTTTTAGCTAACATGGCTGGAATGTATGCTGTC 130759 Query 158683 TATCATGGTGCAGATGGA 158700 ||||||||| || | ||| Sbjct 130758 TATCATGGTCCATAAGGA 130741 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 157882 ATAGGTCAAGGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAG 157941 || || ||||| | |||||| || ||| || || |||| ||||| ||| | || Sbjct 131556 ATTGGACAAGGTTTCTATGGTACACACACTCCATACGTGATACTCCGAAATGTTTTAGAA 131497 Query 157942 AATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTG 158001 | ||| | ||||||||||| || ||||| || ||||||||||||| | || |||||| Sbjct 131496 GACCCTGGATGGTACACATCCTATACTCCTTACTAAGCTGAGATATCATAAGGTAGATTG 131437 Query 158002 GAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAAC 158061 || || || |||||||| |||| || | |||||| | |||||| | | | || Sbjct 131436 GAGGCATTGCTCAATTACTAAACTGTCGTAACAGAATTAACAGGAATGGATGTTTCTAAT 131377 Query 158062 GCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 |||||| |||| |||||||| || || || | ||||||||| Sbjct 131376 GCATCTTTATTGGATGAAGCCACAGCTGCTGGTGAAGCAATG 131335 Score = 102 bits (112), Expect = 1e-16 Identities = 249/374 (67%), Gaps = 9/374 (2%) Strand=Plus/Minus Query 159409 TCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTC 159468 || || |||||||| ||||||||||| || || | || || | | ||||||| || Sbjct 130025 TCTGCTCATGGAACAAATCCTGCATCTGCTGTATTAGCTGGTTTAACAGTTGTACCAGTA 129966 Query 159469 AAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCAT-GAA 159527 || || | | ||||| | || | ||||| | || |||||| |||| ||| Sbjct 129965 AA---TGTTAAGGATGGATTTGTGGATTTATAAGATTTGGAAAAGAAA---ATCAAAGAA 129912 Query 159528 TAC--ATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAA 159585 || | | | | | ||||||||||| ||||||||||| || ||||||| | |||| Sbjct 129911 CACGAAGCTAACTTAGCCTGTATTATGATCACATATCCATCAACTTATGGTGTTTATGAA 129852 Query 159586 ACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGAT 159645 | | || | | || | | | ||||| ||||||| || ||| | ||| Sbjct 129851 GATTAAACCAAAAAAATCATTGAATTAATTCATTTACATGGTGGATTAGTGTATATGGAT 129792 Query 159646 GGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTA 159705 ||||| ||| | ||||| | || || | | |||| || | | ||||| ||||| Sbjct 129791 GGTGCCAATATGAATGCTTAAGTTGGATTTACTTCACCAGGTTATTTAGGTGCTGATGTT 129732 Query 159706 TGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTA 159765 || || | || |||||||| ||||| || |||||||| ||||| ||||| || || Sbjct 129731 TGCCACTTGAATTTACATAAAACATTTGCCATCCCACATGGTGGTGGTGGTCCAGGTTTA 129672 Query 159766 GGTCCTATTGGTGT 159779 ||||| |||| ||| Sbjct 129671 GGTCCAATTGCTGT 129658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588045488552720