Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq56 403 2e-107 seq10 333 3e-86 seq63 84.2 2e-11 >seq56 Length=254943 Score = 403 bits (446), Expect = 2e-107 Identities = 1173/1799 (65%), Gaps = 37/1799 (2%) Strand=Plus/Minus Query 47028 ATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAA 47087 ||||| || ||||||||| ||| |||| || ||||| ||| | ||| || Sbjct 217798 ATACCTGTTTTTAAACCTTTTTCCCAAGCATAAAAGTGCATTGAAGTGATTTTTGACATT 217739 Query 47088 CTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCT--AT 47145 | ||||| | ||||||||||| | |||| ||||| |||||| |||| | || || Sbjct 217738 GTTGGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGAT 217679 Query 47146 -CAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGT 47204 ||||| | || || ||| ||| || |||||||| ||||| || || | | Sbjct 217678 ACAGCT---AGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCT 217622 Query 47205 TTAATGTCTTCTGGGAG---ATTAGTATTTTGAATAGATCCTCCgttttctataattttg 47261 || || | |||||| | || | |||||| || || || ||| || | ||| Sbjct 217621 TTTATATTTTCTGGTATTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTA 217562 Query 47262 ttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaA--AGATGAGGAT 47319 ||||| | || || |||||| ||| |||| ||| | | | || | ||| |||| Sbjct 217561 TTTTTGATAGCAGGTGTCCAAAGATTTAATTCAATTA--GATCCTCAACTAAATGGGGAT 217504 Query 47320 TAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTT 47379 ||| | ||||| |||| | ||||| | | | || || ||| | |||||||||| Sbjct 217503 TAATACAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTT 217444 Query 47380 CTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTA 47439 | | |||||||||||| ||||||| | |||||||| |||||||| | ||| | || Sbjct 217443 CGAAGGATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATA 217384 Query 47440 ATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAA 47499 ||| |||||| | ||||| ||| ||| | | |||||| | | Sbjct 217383 GTAATGAATTTCTCATTCCATGTTTGATTATATTTTATTTCAAGGAATCCCAATC--ATA 217326 Query 47500 GATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT-TCCTTTACTTATC--GGAG 47556 || |||||| |||||||| | |||| ||| | ||| ||| || | || ||| Sbjct 217325 CAT-TGATGGTTTGACATTCCACATATCAAATT--ATAATATCCCCTA-TGATGCTGGAC 217270 Query 47557 AACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATG 47616 || | | |||||| |||||| || | | ||| | |||| || | ||| Sbjct 217269 TTCCTTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAACGTAAACATG 217210 Query 47617 CACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAA 47676 | |||||| ||||| ||||| |||| | |||| ||| | ||||| | Sbjct 217209 ATCCATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATTCGA 217150 Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736 |||| |||| ||| || ||||||| |||||| | |||||||||| Sbjct 217149 AAGGTATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796 |||| ||||||| |||| |||| | | ||||| || | |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGT 47856 ||| ||| |||||| ||||||| ||||||||| | Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTC 216970 Query 47857 TATTTATA---ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 ||| | | |||||| | | | |||| |||| ||| |||||||||| ||||| Sbjct 216969 TATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCAT 216910 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 ||| |||||||| || ||||||| ||||| ||||| || ||| || || || |||| Sbjct 216909 CAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAAT 216850 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 | | |||||| | | |||||||| || ||||| | |||| |||| ||||||| Sbjct 216849 TCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTG 216790 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTT 48093 ||| | | || || || || ||| | | |||||||| || | ||| | Sbjct 216789 ATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCTTCCCA 216730 Query 48094 TATTATCATGTTCGTAT--TTAGTATATAACTTCTCAAATTCATCCCCATACACATTATC 48151 | || | | ||| ||| ||| |||||| || | || || || ||||| ||| | | Sbjct 216729 TTTTTTTTTATTCATATGATTA--ATATAATTTATTGAACTCTTCTCCATA-ACAATCTT 216673 Query 48152 TAA-CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 || ||| ||||||||||| || ||||| | | |||||| |||| | ||| ||||| Sbjct 216672 AAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTT 216613 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||||||| ||| || ||||| | ||| ||||||||| || || ||| ||||||| Sbjct 216612 ACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAA 216553 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAG-TCCATTATATCAGCATGCCATGGTTCTAAA 48329 | ||| |||| | | || |||||| ||||| || ||| |||||| ||||| || Sbjct 216552 TTCCATGATTCTTACGTAATTAAAGAAAACTCCAT-ATGTCACTATGCCAAGGTTCCAAG 216494 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 |||| || | | |||| || ||| |||||||| ||| | |||||||||||||| Sbjct 216493 TATACGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCAGTATCA 216434 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||| | ||| ||| ||| || || | ||||| ||||||||| ||||| ||||||| Sbjct 216433 TTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGAATATAA 216374 Query 48450 CTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATT 48509 || | | ||| || ||| || | ||||| ||||| || |||| || Sbjct 216373 CTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTTACTAATA 216314 Query 48510 AGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAAT 48569 |||||||| | ||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 216313 AGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCATATCCAAT 216254 Query 48570 AGAAAACAACTAGACATT--TGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 || ||||| ||||||| || | ||| || || ||| ||||||||||||| | Sbjct 216253 AGGAAACATGAAGACATTTATGGGAATG--GTGTGCCACTATTGAATAATGTTGGAGTAG 216196 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCC 48687 ||||| |||| |||| | ||| | ||| | ||| || | | | | || | | ||| Sbjct 216195 CATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGAAGATCAT 216136 Query 48688 ATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGT 48747 | ||| || || ||| || | ||||| | | ||| |||||||||| ||| | Sbjct 216135 GCTTATGAATTCCAATACTCACTCTCATTATTAATTGTTGGGGTCTTTCAATTGGTTTCT 216076 Query 48748 TATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAA 48806 || | || | | || | |||| ||||| || || |||||| | | |||| || Sbjct 216075 TACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAAAAATCGTATTAA 216017 >seq10 Length=460275 Score = 333 bits (368), Expect = 3e-86 Identities = 648/953 (68%), Gaps = 47/953 (5%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| || || ||||| || || | |||||| |||| ||||| || |||||||| | Sbjct 100868 TCATGACACCAGCTTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTT 100927 Query 18716 CTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT 18774 | || || ||| ||||| | || || ||||| || ||||| | || ||| Sbjct 100928 AGAGGGAAAT-CATATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCA 100986 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || | | || | ||||||||| || ||||||| ||| ||| ||||| | || Sbjct 100987 CCAAGAGCGAAAATTAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAA 101046 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 |||||||| ||||||| || |||| ||| || ||| ||||| | ||| ||| || Sbjct 101047 TTCATTCCAATTAATTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACA 101106 Query 18895 GCCTCTGATATAATAGATACA---ACTCTATCTTCATTAGG-AGGGTATAGA--AGATGT 18948 || ||| ||||| | || | ||| || ||| | || ||| || | ||| Sbjct 101107 GCAGATGAAATAAT---TTCATGGATTCT---TTGATTGGATAGTTTATTGACCATATGC 101160 Query 18949 TTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTA 19008 || | | ||||| ||||||||| ||||| ||| || ||||| |||||||||||| Sbjct 101161 TTGTAGAGTAAACAAGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTG 101220 Query 19009 GAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGAT 19068 || ||||||| || ||||| ||| ||| ||||| | ||| || || | | ||| || Sbjct 101221 GAGAATGTTAGTCCTGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAA 101280 Query 19069 CCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCA 19128 ||||| ||||| || ||||| || || || ||||||| ||||||||| || | | | Sbjct 101281 CCAGAGAAGAAGATGCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAA---TGAA 101337 Query 19129 TCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTT---TTACACATGGCATT 19185 ||||||| || |||||||||| |||||| |||||||||| ||||| |||| Sbjct 101338 TCATTATCATTGATCCATTTCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACA 101394 Query 19186 GTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 | || || | || | || || | |||| | ||| | | || | ||| ||| Sbjct 101395 TTGTCAATGGCATGGAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATC 101454 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 || | | || |||| ||||| |||||||| || || || | |||||| || |||||| Sbjct 101455 AAGAGAGAATATGTTTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACAT 101514 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 || ||||||| || || ||||| |||| ||| || | || || ||||| || ||| Sbjct 101515 CTGGCTTCTGGAATTTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATT 101574 Query 19366 CCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTT 19425 |||||||| || ||||| || || ||||||| ||||||||| || ||||| ||||| || Sbjct 101575 CCATCACTGGCAGCAAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTT 101634 Query 19426 AATGTATTCCAATCATTAATATC------TTTAGATAA------------------ATCT 19461 ||| | | |||||| |||| ||| |||| ||| ||| Sbjct 101635 AATTTTTCCCAATCTTTAAGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCA 101694 Query 19462 ACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGA 19521 | ||| ||| | |||||||| ||||| || ||| ||||| ||||| |||||| Sbjct 101695 ATTTCCTCAGCAGTCCAAAAGCTAGCCTTGTGTTATTTGTACATATTCCAGATATCATTG 101754 Query 19522 TATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 || | || || || | |||||| |||||| |||| ||| | ||||||||| Sbjct 101755 TACTTAATTGGGAACAGAACAAACCTATTTGGATTTGGTTTCAAAATAGGTTC 101807 >seq63 Length=234995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 65891 TTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTTGCAGCATTGG 65950 |||| || || | |||||| ||||| ||| |||||| || ||||| ||||| ||||||| Sbjct 143561 TTGTTGAATTCTCTGAAAAGATGGCTAATTTAGGAAAGATTGTGATTGTTGCTGCATTGG 143502 Query 65951 ATGGAACATTTAAAAGAAAACCTTTTGGTAATGTATTAAATTTAATTCCATTATCTGAAA 66010 |||| |||||| | || || || || || | | |||||||| ||| | ||||| Sbjct 143501 ATGGTACATTTGATAGGAAGCCATTCCACAACATCCTTAATTTAATACCACTTGCTGAAC 143442 Query 66011 CAGTAACAAAACTTACAGCTGTGTGT 66036 |||| ||| | || ||||| ||| Sbjct 143441 GTATAACTAAATTGACTGCTGTTTGT 143416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562103340518280