Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 280 2e-70 >seq10 Length=460275 Score = 280 bits (310), Expect = 2e-70 Identities = 591/868 (68%), Gaps = 50/868 (6%) Strand=Plus/Plus Query 36820 TCATTTTTTAA-AAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACT 36878 |||| |||| | |||||| |||| | |||||| | | |||| || || |||| || Sbjct 100816 TCATCTTTTCAGAAATCTGCATCCATAGTAAATACTTTATCCTATTTTTTACTCATGACA 100875 Query 36879 CCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGAT 36938 || ||||| || || || |||| ||||||||| || || || ||||||| || || Sbjct 100876 CCAGCTTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAA 100935 Query 36939 ATATTTTCCATAAAATCAAATGGATT----AGATGTATTATATATAGTACTACATGAT-- 36992 || | ||||| | || || ||||| | || | || | | | | || || Sbjct 100936 ATCATATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCG 100995 Query 36993 --AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 |||| || ||||| ||||||||||| ||||||| ||| ||| | | Sbjct 100996 AAAATT--------AGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAAT 101047 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || ||||||| || |||||| | ||| || || ||| ||||| || |||| Sbjct 101048 TCATTCCAATTAATTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAG 101107 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAA-----ATAT-- 37163 || | || || | | || |||| |||| ||| |||| |||| Sbjct 101108 CAGATGAAATAATTTCATGGAT----TCTTTGATTGG---ATAGTTTATTGACCATATGC 101160 Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 || | | |||||| ||||||||| |||||| ||||||||||| |||||||||||| Sbjct 101161 TTGTAGAGTAAACAAGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTG 101220 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 || || |||| ||||||||| | ||| ||||| |||||||| || || |||||| Sbjct 101221 GAGAATGTTAGTCCTGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAA 101280 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 ||||| ||||| || |||||||| || || || || | || | | | | || |||| Sbjct 101281 CCAGAGAAGAAGATGCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAA---TGAA 101337 Query 37344 CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAAC-ACATTCA-ATTG 37401 || |||| |||||||| ||| ||| |||||| || || ||| || |||| Sbjct 101338 TCATTATCATTGATCCATTTCATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTG 101397 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACT---ATCTGTTATATAAGTATCAA 37458 | |||| || | ||| |||| |||| |||| | ||| || || |||||||||| Sbjct 101398 T--CAATGGCATG---GAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAA 101452 Query 37459 TTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAAC 37518 | | | | ||| ||||||| || |||||||| || || || | ||| ||||| |||| Sbjct 101453 TCAAGAGAGAATATGTTTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAAC 101512 Query 37519 ACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTA-GCTAAGTTTTCATTAACT 37577 | || ||||| | | |||||| || || | || | ||| |||||||| ||||| || Sbjct 101513 ATCTGGCTTCTGGAATTTGAACTTCTGTACAGAA-TTGTTATGCTAAGTTCTCATTGACA 101571 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--AT 37635 || |||||||| || ||||||||||| | |||||||| ||||| || |||| || | Sbjct 101572 ATTCCATCACTGGCAGCAAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGAC 101631 Query 37636 TTGATAATTTTTTCCAATCATTAATATC 37663 || |||||||| |||||| |||| ||| Sbjct 101632 TT--TAATTTTTCCCAATCTTTAAGATC 101657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592311047123080