Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq39 140 3e-28 seq2 129 5e-25 seq725 109 4e-19 seq6 82.4 6e-11 >seq39 Length=303829 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | | ||||| |||||||| ||||| |||| ||||||||||| | Sbjct 63077 CCTCCTCTTAATCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAA 63018 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| | || || | ||| || |||||||| || | | | ||||||||| ||| Sbjct 63017 AGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGA 62958 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || | ||| ||| ||| || || | |||||||| | ||| || Sbjct 62957 ATGCCTTCCTTGTCCTAAATCTTTGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGACA 62898 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| |||| || || || ||||| ||||| ||||| || | ||| Sbjct 62897 TCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACAAAAATTTACAT 62851 >seq2 Length=701642 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || ||||| || || || ||||||||||| |||||||| || | Sbjct 528630 TTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTG 528571 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||||| |||| || |||| || || || || || | | | || |||||| | Sbjct 528570 AGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTG 528511 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||||||||| ||||| ||| || || | ||||| || | ||| | Sbjct 528510 GGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAA 528451 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||||| ||||| || ||||| || ||||| || || ||||| Sbjct 528450 CATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCAT 528402 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| ||||| | | || ||||| || || || ||||||||||| |||||||| || | Sbjct 527680 TTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTG 527621 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||||| | || || |||| || || || || || | | | || |||||| | Sbjct 527620 AGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAATCGGGTG 527561 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||||||||| ||||| ||| || || | ||||| || | ||| | Sbjct 527560 GGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAA 527501 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 | |||||||||| ||||| || || || || ||||| || || | ||||||| Sbjct 527500 CATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTTACGAAAATTTACATGGTT 527448 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101240 TTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCG 101299 ||||| ||||| | | || || |||||||| || ||||||||||| |||||||| || Sbjct 527909 TTTCCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCT 527850 Query 101300 GCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGC 101359 | || ||||| |||| || |||| || || || || || | | | || |||||| Sbjct 527849 GAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 527790 Query 101360 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 || || |||||||| |||| ||||| ||| ||| || | ||||| || | ||| Sbjct 527789 GGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCA 527730 Query 101420 ACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || |||||||||| ||||| || || || || || || || || | ||| Sbjct 527729 ACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACAT 527680 Score = 104 bits (114), Expect = 2e-17 Identities = 173/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 101222 TATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCT 101281 |||||||| || || ||||| ||||| | | || ||||| || || || |||||| Sbjct 528873 TATTTAATTTATCAG---TTTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCT 528817 Query 101282 TTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 ||||| |||||||| || | || ||||| |||| || |||| || || || || || Sbjct 528816 TTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATA 528757 Query 101342 AAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT 101401 | | | || |||||| || || |||||||| |||| ||||| ||| ||| || Sbjct 528756 AGTCTTTATTAATCGGGTGGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCA 528697 Query 101402 ACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAAT 101461 | ||||| || | || || |||||||||| || || || || || || || || || Sbjct 528696 ATTGTGTCTGATGGTT-AACGTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACGAAG 528638 Query 101462 ATCTGCAT 101469 || | ||| Sbjct 528637 ATTTACAT 528630 >seq725 Length=304 Score = 109 bits (120), Expect = 4e-19 Identities = 145/200 (73%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 101247 CTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAG 101306 |||| || | || |||||| ||||| || ||||| ||||| |||||||| || | || | Sbjct 304 CTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTG 245 Query 101307 TTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGC 101366 |||| | || || |||| ||| || ||||| || | | | ||||||||| || || | Sbjct 244 TTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTC 185 Query 101367 CTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAA 101426 |||| || |||| |||||| ||| || || | ||| || || | ||| || |||| Sbjct 184 CTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAA 125 Query 101427 GAGTGAC-CGTTTTGCCGGT 101445 ||||||| ||||| || || Sbjct 124 GAGTGACTTGTTTTCCCAGT 105 >seq6 Length=529034 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || ||||| | || ||||| || ||||||||||| ||||| || || | Sbjct 15901 TTCCTCCTCTCAATCGTAATGCCAAGTGAAGTGTTGATTCTTTTTGAATATTATAGTCAG 15960 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || ||||| | || || |||| |||||| ||||| | | | | |||||| || | Sbjct 15961 AGAGTGTTCTCCCGTCCTCTAATTACTTACCAGCAAAAACTAGTCTTTATTGATCTGGTG 16020 Query 101361 GAATGCCTTC 101370 | || ||||| Sbjct 16021 GGATTCCTTC 16030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396274647367389