Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq39 84.2 2e-11 >seq39 Length=303829 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || |||| ||||||||||| || ||| ||| |||| || | || || || ||||| Sbjct 63041 TCCTTTTAGATATTGTAATCTGAAAGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAA 62982 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| | |||||| | ||||| ||| |||||||| ||||||| ||| || | | Sbjct 62981 ATAAGTCTTTATTGATCGGGGGGAATGCCTTCCTTGTCCTAAATCTTTGCTTTAACTGCA 62922 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | || || || | || || || || || || || ||||| ||| Sbjct 62921 TCGATGGTGTCAGAAGGTTCGACATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACA 62862 Query 48756 AAAATCTGCAT 48766 ||||| | ||| Sbjct 62861 AAAATTTACAT 62851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380933992639971