Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=701642 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 |||| |||||||| || ||||| |||||||| || |||||||| || || |||| Sbjct 528397 TAAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTGAAC 528456 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 | ||||| || | | | |||| |||||| || ||||| ||| | || | Sbjct 528457 CATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCG 528516 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 || || | ||||||||||| || || ||| |||| |||||| | ||| | | || | Sbjct 528517 ATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACT 528576 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || |||||||||||||| || || ||| | ||||| ||| | |||| || || Sbjct 528577 ACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAAT 528631 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||| |||| || || || ||||| || || |||||||| || || ||||| || Sbjct 527679 AATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATC 527738 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | | |||| |||||| |||||||| ||| | || ||| | Sbjct 527739 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 527798 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 | | ||||||||||| || || ||| |||| |||||| | ||| | | || || || Sbjct 527799 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 527858 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 |||||||||||||| || || || |||| || ||| | |||| || Sbjct 527859 TATTCAAAAAGAATCCACACTTCATTTGGTGTTGAGACTTAGAGGTGG 527906 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGG-AACCTT 28611 |||| |||| || || || ||||| || ||||| ||||| || || || |||| | Sbjct 528629 AATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGA--CGTTAACCAT 528686 Query 28612 CAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 |||| || | | | | |||| |||||| |||||||| ||| | || ||| Sbjct 528687 CAGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATT 528746 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 || | ||||||||||| || || ||| |||| |||||| | ||| | | || || | Sbjct 528747 AATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACA 528806 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | |||||||||||||| || || ||| | ||||| ||| | |||| || Sbjct 528807 ATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGG 528855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||| |||| || ||||| ||||| || || |||||||| || || ||||| ||| Sbjct 527452 ATGTAAATTTTCGTAAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 527511 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | |||| |||||| || ||||| ||| | || ||| || Sbjct 527512 GACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCGATTAA 527571 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 | |||||||| || || || ||| |||| ||||| | ||| | | || || || Sbjct 527572 TAAAGACTTATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACACTCTCAGACTACAAT 527631 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 |||||||||||||| || || ||| | ||||| ||| | |||| || || Sbjct 527632 ATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAAT 527681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425400771549483