Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq56 168 3e-37 >seq56 Length=254943 Score = 168 bits (186), Expect = 3e-37 Identities = 329/479 (69%), Gaps = 8/479 (2%) Strand=Plus/Minus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 |||||| || | | | |||||| |||| || | |||| | | |||||||||||| || Sbjct 216656 ATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTACATAAATAAATCAGG 216597 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 |||||| | | | ||||||||||||| | || |||||| |||| |||||||| Sbjct 216596 AATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATTCCATGATTCTTACG 216537 Query 26008 TAGATCTAAGAAATC-AAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTAC 26066 || || |||||| | | || || ||||| ||||| || || | ||||| || Sbjct 216536 TA-ATTAAAGAAAACTCCATATGTCACTATGCCAAGGTTCCAAGTATACGGCAAATGAAC 216478 Query 26067 CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACA 26126 ||||||| || || || |||| ||| || ||||| ||||| ||||| || ||||| | || Sbjct 216477 CTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCAGTATCATTAAATACTTTTAGCA 216418 Query 26127 TTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 | || || |||||| | | || ||||| | | |||| | || |||||||| Sbjct 216417 TAGGCACCAATCCATTACTTATACCATTTGTTCCACGAATATAACTATCTTACGATCTAA 216358 Query 26187 -TATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAA 26245 | | | | | ||| || ||||||||||| |||| |||| ||||| | Sbjct 216357 TTTTAGATATACTCAAT-CCTATTCCACCAGCTTATTTACTAATAAGAGCACATCTTTTT 216299 Query 26246 ACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGAT 26305 | ||| || ||||||||| ||| |||| || ||| | |||| ||||| ||||| Sbjct 216298 AATGTTTCATAAATTCCTTCTATTGAATCATCTACCATATCCAATAGGAAACATGAAGAC 216239 Query 26306 AAT--TGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | || |||| | ||| || ||| |||||||| || |||||||||||| | ||| Sbjct 216238 ATTTATGGGAAT--GGTGTGCCACTATTGAATAATGTTGGAGTAGCATGAGTAAAGTAT 216182 Score = 98.7 bits (108), Expect = 5e-16 Identities = 221/331 (67%), Gaps = 1/331 (0%) Strand=Plus/Minus Query 24849 TTTTCATCGATATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTG 24908 |||| || || || || || |||| |||||| ||||||| | ||| || Sbjct 217658 TTTTTAT-GAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATATTTTCTGGTATTTCAT 217600 Query 24909 CAATATTTTGAACTGATCCATTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAA 24968 ||||||||| ||| || ||||| | | | || || | | ||| |||||||||| Sbjct 217599 CAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTTTGATAGCAGGTGTCCAAA 217540 Query 24969 GATTAATTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACA 25028 |||| | || ||||| || || || ||| || || ||||| |||| || Sbjct 217539 GATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAATACAAACGAATTCACCAGCCA 217480 Query 25029 AAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGA 25088 |||||||||| | | | ||| | ||| ||||||| || ||||||||||| ||| | Sbjct 217479 AAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAGGATTCATTATTTTATAAAA 217420 Query 25089 TTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATT 25148 ||| | || ||||| || ||||| ||| | || || |||||||||| |||| || Sbjct 217419 TTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAATGAATTTCTCATTCCATGTT 217360 Query 25149 TAACAATCTCTTGTTTTAATTTATCCCAATC 25179 | | || | || ||| || ||||||||| Sbjct 217359 TGATTATATTTTATTTCAAGGAATCCCAATC 217329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037603790275